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Information for unigene UN18223

FASTA Sequence
Unigene ID: UN18223Length: 1350 SSR 
GGGGATAAAGATATTAGAACGAAAACAGAGTTACATCGTATAATGAAAAACGTAAAGAGATCATTTACAAAGACGTCAGAGGATCG
TTTCATTTTTTTTGTTTTTCTCCATCATACAAAAAGACTACTTACACTAGAGAGAAGAGACATATGTCAGAAGTAGAAGTCAATGA
TGATTTGGTCTGATGGTACAACATTGCGAGGTGGACTCTCACCAATCTCAGCATTCACATCTCTTTGCTAACGTTTTCTTCACCCC
TCTCACAATCTTACCGAACCATACCAAGTTCATGATACCTAGTGCAGCTGGTACACCAAATACCAGAGCGTATCCGAAGATGTGCA
TCCTCATAACCTGGTTGTAGTGGAGATAGACATGATAAAACATGTATATGAATAGTAGAATCCTAGCAACCAGCCAAGCCAAGAAG
ATGAAAACGCCATTGACAACATATGCCATTGACTTCTTCATACCAGCTGTGTCAAGGTACCATCTCAAGTTGATCTCTGGGGTTGT
AATCTCAGAAATGAGGACCATGTAGGTATACAACTGCCCTTCCCCAGAAAACAAGGAGTAGGCAACAGCTACCCTTGATAGCGAGT
GATGCACAATATACTCAAGTCCACCCAAAGCAGGATACTTCCAGAAGATCATCCCAAGATCAGCAATGAAGTAACCAATGGATAAT
CCTAAACCAAGAGAGGAAAGACGTGAGCTCCGGAAGACGACAAGATCGTTATGCCACCTATCGGAAAAGAGATCGGACCAGAAGAC
AAAGTAGAGAGAGAGAGCAGAGATAAAAAGGGCATGAACTGTTGAGATACCACGGTTGTTCCATTCGATTCTCTGAATTTTGGTAA
GGATGATATATGTCTTGGAATGTGAGTTGCTGACAAAGTGACAAAGATCATAGACCACTTTGCAAAGGAAAATGCCGGTGAGAACA
GAGGTGTAAGGAATAAAGGGATCAGCTAAGAGATAGTTGTTAACCAAATGCTGAGCTTGGTGATGATAGGACTTGATGGCACCAAT
CGTCTGCAAAGAAGTCGTCGACATTGCAGAGATATGTCACAGATGCTCTTCAAGTTTGGCCACCAAGAAAGAGAATCAACAACTCT
CTCTCTCTTTTAGGGAAAGGTCTCAGGGACGCAAAGGAAGGTAAGGTGTTGTTTAGAAACGGCGAGAAAAGCTCAGAGAGTGAGAG
AAAGGGTAAATAGGAAGTAGCATCAACGAAGGCTTTAGCTTTAATCACCGTGATTGTGATTGTGAAGGGGAAAGAGGAGGCGAAGA
AGAGCACAACAACACACGAAACGAAAACGCTACATAATCCTCCTTCTCAACAGAAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893848 hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]14298e-156
NP_564377 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]14271e-155
BAH19941 AT1G31300 [Arabidopsis thaliana]14135e-154
XP_002263050 PREDICTED: hypothetical protein [Vitis vinifera]10712e-114
CBI29075 unnamed protein product [Vitis vinifera]10694e-114

Swiss-Prot top hits (Blast detail)Scoree value
Q6PGS5 Transmembrane protein 56-B2332e-018
Q8CGF5 Transmembrane protein 562322e-018
Q5XIY2 Transmembrane protein 56-B2107e-016
Q96MV1 Transmembrane protein 562044e-015
Q6GLX2 Transmembrane protein 56-A1892e-013

TrEMBL top hits (Blast detail)Scoree value
Q93Z82 At1g31300/T19E23_1214279e-156
B9DGS4 AT1G31300 protein14134e-154
B9ICG7 Predicted protein10272e-109
Q8GSI6 At4g1964510192e-108
B9NA48 Predicted protein10182e-108

Arabidopsis top hits (Blast detail)Scoree value
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).14284e-158
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).14284e-158
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).10191e-110
AT4G19645.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).10191e-110
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).6676e-070

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  25%
 
71  25%
 
61  25%
 
91  25%

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