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Information for unigene UN18257
| FASTA Sequence |
| Unigene ID: UN18257 | Length: 1269 |
SSR | | CTAAATTATTCTAAGAAAAGAGAAGAGATGATGATAAAAAAAAAAGTGTTGAAATCAAAAAGATTACACATGACTGAATAATGCAT
CTTTCATTATGTTGCTAAAAAAACCTTATTGACAAGTTTTAAAAGACAACAAAATTCGAGCTTATTGAGAGGGAAAATACTTTTTG
CCTGTGATGATGATGATAAAACTCTTCTTCCTCTTCTTCGCATATCCTATTATAGCCTCACATTCATTCATTCTCCATGAAATTAG
ATACTAAGCATGTCTGAGTTTCCCCACATGCTTACGAGAACTGAGCACTATCATCTTTTCTCACCTCTGGAGGGACTTGTAGAGCA
CCACAGTAACGTACTTGGCCAGAAAACGGTGAGTGGAACCAAGAGCAACCACAGACGGACCGCTTTTGCCTTTCTGCATGTAGAGA
TGGTTGAGGATGACGTGCTGAGGTCTCGGCAGCGGTGATGGAATGTCAGGGCTGGCTGGAGGCAAGTTCAGCAGCGTCATCTGCAA
GTGCGGCGGAACCAGAGGCGGTTCTTTGGAGTAGTCCTCAGCTCCTAGAAGCAAGCTGCTGTAACTAGCTTCTGGTGATTGCGGTG
GCTCAAAACCAGATATGCTTTCAATGTCTTCTGGTACATAGTCCTGGAGGTCCAAAAGGTTGAAAGTGTTGCCAGCGTCATCACGA
GCGAGAGGGAGCTCAGGGGCATGCCTCCACTGTCCATCAACGATGAACCTGTACTCATAGACACCTGAAGGTAGGACTTTCATTAT
AGTGAAGTCTTTCCCAGATCTCTGAAGCCGACTTCTTGTCTTCCAATTATCCCAAGAACCTTCGACAGCAATCTCCTTACCACCAT
GGCACCGAGTGATCATGGTGGGGATACCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGAGACTGCATCCAGGAAGGGTTAGGGATG
TGGATTTCATCTGGTCTTTGGAGAGGAAGCACCGGAACCTGAGGAGCAAACATGAGAGGAGATTGAGTGGCGCGAGGTGATTGAGG
AGGAGATTGACCCATGAGTTCAGGAGGAGGAGGTGCGGTGGTGTCGGAAGAAGACATGGGTTGATGAATCTCACCGTCGTTGTTGT
CTTCGAGTTGTGATGCGTTGTTGTTGTGGTGGTGGTGGCTACTGTTCGCTTCGTCTCTCGCGTTCACGTTGCCCATAGAGAGAGAG
AGAGAAGAGAGGATACGGACAAAAGAGGGGGTGATCTTAATGCTTTTGTGTGTGTGCGGACAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| Q9SCY5 RecName: Full=SNF1-related protein kinase regulatory subunit beta-2; Short=AKIN subunit beta-2; Short=AKINB2; Short=AKINbeta2 | 1307 | 1e-141 |
| NP_193369 SNF1-related protein kinase regulatory subunit beta-2 [Arabidopsis thaliana] | 1260 | 3e-136 |
| NP_001190741 SNF1-related protein kinase regulatory subunit beta-2 [Arabidopsis thaliana] | 1260 | 3e-136 |
| CAB10413 kinase like protein [Arabidopsis thaliana] | 1257 | 6e-136 |
| XP_002870164 AMP-activated protein kinase [Arabidopsis lyrata subsp. lyrata] | 1253 | 2e-135 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SCY5 SNF1-related protein kinase regulatory subunit beta-2 | 1307 | 4e-143 |
| Q84VQ1 SNF1-related protein kinase regulatory subunit beta-1 | 649 | 8e-067 |
| Q9QZH4 5'-AMP-activated protein kinase subunit beta-2 | 337 | 1e-030 |
| Q6PAM0 5'-AMP-activated protein kinase subunit beta-2 | 333 | 4e-030 |
| O43741 5'-AMP-activated protein kinase subunit beta-2 | 188 | 2e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2V3H9 Uncharacterized protein At4g16360.2 | 1243 | 2e-134 |
| B9HCD2 Predicted protein | 1089 | 1e-116 |
| B9IH18 Predicted protein | 1071 | 2e-114 |
| B9SA62 Snf1-kinase beta subunit, plants, putative | 1055 | 1e-112 |
| Q7XYX7 AKIN beta2 | 982 | 3e-104 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G16360.1 AMP-activated protein kinase | 1261 | 8e-139 |
| AT4G16360.2 AMP-activated protein kinase | 1244 | 7e-137 |
| AT5G21170.1 5'-AMP-activated protein kinase beta-2 subunit, putative | 650 | 6e-068 |
| AT5G21170.2 5'-AMP-activated protein kinase beta-2 subunit, putative | 580 | 7e-060 |
| AT2G28060.1 protein kinase-related | 226 | 8e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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