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Information for unigene UN18274
| FASTA Sequence |
| Unigene ID: UN18274 | Length: 1576 |
SSR | | GGATCACTCATTCAGTTTGTGGCTCTACGTTAAATCCTCGAGAGAGAGAGAAAATAAAGGTTTTAAATCTTTTATACAATGTCAAA
AAAAGCGTTAGGCCTATTGCTTGATCTGGAATCACAAGAAAGTTGTGGTCCTCCTTCATTTATGTCACATGCCCTTTCCAAGGATC
CACAACCAACCTCCGGGGATGACGACTGCGGAGATGTTGGGAGGATTCCGTTAGAGGAGTGGCTGCCGATCACAGAATCAAGAAAA
GGAAATGTTTTCACGGCAACTTTTCATCTTTTCTGTTCGGGACTTGGTTTCCAAGTGCTTCTTCTTCCTGCAGCTTTCGCAGCACT
CGGATGGGTATGGGGAATAATAATATTAACGGTGGGATTTGCATGGAAGCTCTACACGACATGGCTTCTTGTTCATCTACACGAAG
CCGTACATGGAACACGTTTCAGCAGATACTTGAGACTCGCAATTGCTTCATTCGGTGTGAAGCTTGGGAAACTTCTTGGAATATTC
CCTGTGATGTATCTCTCAGGAGGAGCTTGTTCCATTCTTGTCATAACCGGAGGAAAAACAATAAAACAACTTCTACACATTATGTA
TGAAGGTGAAACAGTGCCCCTTACCACACTACAATGCTTCGTGATCTTCAGCTGTCTCGCGGTGGTCATGTCTCAGTTTCCAAACC
TGAGCTCTCTTTTCGAGTCTCGTTCATCGGTGGTGTTATGGCCATAGCATATTCCACCGCAATATGGAGTTTACCTCTAACTAGGG
GTCCGCAAAGGAATCATCAAAACCATGTTTCTTACGCTATAAAGGATACAACTTTCGATAATATTTTCAACGCCATTGGATTGATA
GCCATTTCATTACGCGGGAACAACTTAATCCTAGAGATACAGGGTACTCTTCCTTCCGATTCAAAGAATCCTTCCAGTAAGACGAT
GTGGAGAGCTGTGGTGATCTCTCATGTGATCATTGCGGTTTGTATGTTTCTAGTAGCCATTGTTGTATATTGGGCATACGGTGACA
AGATTCCGGCTACTGGAGGTCCAATAGGCAACTACTTGAAACTTTACGAACAAGACTACTCAAAGCGAGCGGCTTGTTTCATACAC
ATCACGTTCATCATCAATTGCTTATGCTCGTATCCGATAAACTTAATGCCAGCTTGTGACAACGCAGAGATGGTGTATGTGACCAA
GAGACGAAAGCCTTGCTCTGTCTTCGTCCGGATGATGTTTCGTGTGTTCTTGGGTTTGGTTTGCTTCTTCATAGCTGTTGGATTCT
CGTTCTTGCCTTATCTTGCGGTTCTTATCGGAGCAGTAGCCTTGCTTGTTACGTTTACGTACCCGTGTTTCATGTGGATCTCTATC
AAACAGCCCGAAACGAAAAGCTTGATGTGGTTGCTCAACATTTTGGTGGGAAGCTTAGGCGCGTCTCTCAGCGTTTTGCTTGTGGT
TGCGTCGGCTTTATTTTTGGCTGATAGGGGTTTACATGCAAACTTCTTCAAACCCTAAAGCATTCTTGCTAATGTGAGCATGTAAA
TATATATGATTTTTTTATCACAAGAGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867086 hypothetical protein ARALYDRAFT_491132 [Arabidopsis lyrata subsp. lyrata] | 1087 | 4e-116 |
| AAM65081 amino acid permease-like protein [Arabidopsis thaliana] | 1085 | 7e-116 |
| AAO41951 putative amino acid permease [Arabidopsis thaliana] | 1081 | 2e-115 |
| NP_567977 LYS/HIS transporter 7 [Arabidopsis thaliana] | 1081 | 2e-115 |
| CAB36725 amino acid permease-like protein [Arabidopsis thaliana] | 905 | 5e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84WE9 Lysine histidine transporter-like 7 | 1081 | 9e-117 |
| Q9SX98 Lysine histidine transporter-like 8 | 510 | 1e-050 |
| Q9C733 Lysine histidine transporter-like 1 | 313 | 1e-027 |
| Q9SR44 Lysine histidine transporter-like 2 | 313 | 1e-027 |
| Q9FKS8 Lysine histidine transporter 1 | 309 | 3e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9H1N8 Lysine/histidine transporter (Fragment) | 644 | 7e-065 |
| B9SQZ9 Amino acid transporter, putative | 629 | 4e-063 |
| Q43537 ORF (Fragment) | 614 | 2e-061 |
| B9R8J4 Amino acid transporter, putative | 611 | 5e-061 |
| A5C8N1 Putative uncharacterized protein | 601 | 7e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G35180.1 LHT7 (Lys/His transporter 7); amino acid transmembrane transporter | 1082 | 6e-118 |
| AT1G47670.1 amino acid transporter family protein | 510 | 1e-051 |
| AT1G48640.1 lysine and histidine specific transporter, putative | 313 | 9e-029 |
| AT1G67640.1 lysine and histidine specific transporter, putative | 313 | 9e-029 |
| AT5G40780.1 LHT1; amino acid transmembrane transporter | 309 | 3e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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