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Information for unigene UN18285

FASTA Sequence
Unigene ID: UN18285Length: 969  SNP
GCATCCAGTGTATTGCACTAACGTCATCGTTAAAGGTGTTACCATTCTCGCTCCTATCGATTCTCCTAATACCGATGGAATCAACC
CTGATTCATGCACCAACACATTGATCGAAGACTGTTTCGTAGTCTCCGGAGACGATTGCATCGCCGTCAAGAGCGGTTGGTATCAG
TTCGGTATCAAAGTCGGAATGCCAACTCAGCAACTCTCTATCCGAAGGCTCACATGCATCTCTCCCGACAGTGCTGGAATAGCACT
GGGAAGTGAAATGTCCGGTGGGATCAAAGACGTTAGGATGGAAGACATAACGTTGCTTCAGACACAATCCGCTATCCGAATCAAAA
CAGCTGTTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATGAAGACAATGAAATACGTTTTCTGGATGAGT
GGTGCCTATAACCAACACCCTGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATTACCGTGACATGACCGC
GGATAACGTTACGCAGCCCGCTAGGCTCGATGGGTTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATATAAACATTGCTT
TGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCGGAATTTCGAGCAAGGTGACGCCAAAACCGTGTAGCTTG
TTACCAGAGAAATCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAACAAATGCTCTGCTTA
GAGAATGTTGCGGATATCTCATATTTTTTAATTTTATCATCATAAAATTTATATACCTTAGTGAACATGGCCCAGCTGCTACTGTA
TTGTATAAAGCTGATTAGGTTCATGCAATGGTTTTACTATACTATAAAGCTGATAGGTTCATGCAATGGTTTTACTATACTAAACG
AAGTTATATAATTAGCTTTGTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179968 Pectin lyase-like protein [Arabidopsis thaliana]12898e-140
AAC63679 putative polygalacturonase [Arabidopsis thaliana]12898e-140
ABK28510 unknown [Arabidopsis thaliana]12898e-140
XP_002878707 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]12898e-140
NP_190464 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]10773e-115

Swiss-Prot top hits (Blast detail)Scoree value
A7PZL3 Probable polygalacturonase9094e-097
P27644 Polygalacturonase2392e-019
Q9LW07 Probable polygalacturonase At3g157201406e-008
Q8RY29 Polygalacturonase ADPG21317e-007
Q9SFB7 Polygalacturonase QRT21281e-006

TrEMBL top hits (Blast detail)Scoree value
A0MEP7 Putative uncharacterized protein (Fragment)12895e-140
O82218 Putative polygalacturonase12895e-140
Q1PF10 Glycoside hydrolase family 28 protein/polygalacturonase family protein12895e-140
Q9SMT3 Endo-polygalacturonase-like protein10772e-115
B9RIT4 Polygalacturonase, putative9832e-104

Arabidopsis top hits (Blast detail)Scoree value
AT2G23900.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein12902e-142
AT3G48950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein10771e-117
AT4G23500.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein9542e-103
AT3G61490.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein8378e-090
AT3G61490.2 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein8378e-090

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  43%
 
74  57%

Unigene MembersMember information