Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN18302

FASTA Sequence
Unigene ID: UN18302Length: 1495 SSR 
AGCGATCCACTTTAAATAAGATTATGAGTACATTGTTGACATATACTGAGTATTTGTCTTCTCATTCACGTCCACACAATAGAAAA
CAGAGCAATTGTGCACAAAAACCAGACTTATCATAGTTTACATAACTTCATTCATTAACTTAATAGCCTGCTCCTAGTATTCAATT
TGGGTCTTGCTTCCTCACAAAACTTGATCTGGACCTTGCACATGGACGATCTAGGAAGCATTAGTAGATCACTGGTGATCCTAGAC
TTTTCCTTGTCGGTTATTGCATAAGCACAAACTTTGACAAGCTCAAGACATGTCAGTTTCTCAAAGAAAAGCTTCATTTGCTCAAA
CTCTCCAACCTCTCCTCCATACTCAGTTATCTTGAGTACTCTCACAGGTGAAAACCCATACTCACGTTCAACATTATCAGCGTGCA
GTGGACCCTTGATGACAAGAGTCTGTAGATGTGGAGACTTGTTCAAAAGTAGTGGCAGAAACTCCCAATTGTAGCTTGGGTAATCA
ACTGTAATAATTAAGCGAGAGAGGTTGATGAACACTGGAACTGCTTCACGCCATGTACATAGTGCCATCCCAGTATCACGAATAGT
TAAAATCTCCAAGATCTCAACATTTCTTAACCCCTTGATAAGATTTGTTGGATTCCCTTGACCTCCTCCAGAATGGAGATCAAGCT
TAGCTTCGACAAGGGACGGGAGATTCAAAGTTGGATACTTTTTTGGAGGTAAGTCCGAGTATTCCAAGTAGACAAGACTGGGAGTA
TCCAAATTTATGTCCCGGTATTCAAAACAGTCAGTACACTTCATGGTGAGTTTCTTAAGGGTCGAAGAGGAAACATTGCGGGGACA
TTTTAGATCCTGCCAGTACCCACCAAGAACGGTCAGTTCCTCAAGGACAGGGCACGCAGAAAGAAGCTTTCCCAAAACACAGTAAC
GGCTGTTGTAAAAATAAACCCGGCCGAGATAGAGAGTCTTGAGCGATGGAAGAGATACATCCTCAGGGATCATTGCCTCAAACCCT
TGTGTTAGTCTTAAGTGAACCAATGTCTTGCAAGTGAAGATCTCGAGAGGCACCAAGCTCACATCACCAGGAGCGATTACGTCTAT
ATCAAGATTCGCCACACCGTGTTTCACCGCTTCACTCATCCAGCGGGTGACAGGACCCGTGTCGGCATCGATGCTGTTTCGACATG
TTATCGAGATGTTCCTCATTGGGAAACTGCCTGACACAGACAATACATTATCCACAAAATCGATGAAACTTTCTCCTCCATCGACC
ACTCCGTGATCGTCTAGCTGAAGATCTGGTCTGAAGACAAACAAGTAACGCCAACGCTTTGAGAGGACAGATGTTAAAGCAGCCTC
TTCTATGGGTAGGAAAGACAGAATGTGACATATTATCTCGTCTGCTAGACCGTTGAATCTATCCATTGCAAACCCAAGGAGGGGGG
CGGGAGTTGGACCGAGAGAGAGAGAGAGCCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_193959 F-box protein [Arabidopsis thaliana]12578e-136
CAA16778 putative protein [Arabidopsis thaliana]11798e-127
NP_974590 F-box protein [Arabidopsis thaliana]9729e-103
NP_191457 F-box/LRR-repeat protein [Arabidopsis thaliana]5158e-050
CAB86926 putative protein [Arabidopsis thaliana]5158e-050

Swiss-Prot top hits (Blast detail)Scoree value
Q3E7K7 F-box protein At4g222809724e-104
Q9LX47 Putative F-box/LRR-repeat protein At3g592405924e-060
Q94B46 F-box/LRR-repeat protein At4g140965442e-054
P0C2G1 F-box/LRR-repeat protein At3g589805154e-051
Q9M3B7 Putative F-box/LRR-repeat protein At3g491504922e-048

TrEMBL top hits (Blast detail)Scoree value
A8MS33 Uncharacterized protein At4g22280.112575e-136
C0Z3K9 AT3G58990 protein (Fragment)4295e-040
A5BLF6 Putative uncharacterized protein3159e-027
Q3E7S2 At1g190702558e-020
Q9LMC1 F14D16.221912e-012

Arabidopsis top hits (Blast detail)Scoree value
AT4G22280.1 F-box family protein12573e-138
AT4G22280.2 F-box family protein9723e-105
AT4G14096.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G14103.1); Has 1300 Blast hits to 1271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5441e-055
AT3G58980.1 F-box family protein5153e-052
AT3G49150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein insertion into membrane; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59240.1); Has 1228 Blast hits to 1197 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4921e-049

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  29%
 
103  43%
 
62  29%

Unigene MembersMember information