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Information for unigene UN18339
| FASTA Sequence |
| Unigene ID: UN18339 | Length: 1474 |
| SNP | CTCGCAAAATGTTATTTAGTAAAAGCATATAATATAAGATCAAAGCCTCTTAGTGAAAATATGACAAAAAAAGCAAGTTATATCAT
ATCCTATAACAAAATTATTACAGAACACAGAGTGAATACTGTGGCAAAAGCTCTAAACTTTCAGATGAAACCAGAACGTTTATGAC
AAAAGAAAAATGATCCGGAGTTTCATCAGTTATCTTCTTCGTGATCCCGGTTCCGTGAGTCCTGAGAGCCTGCCTGAAGGTTAATG
AACTGAGAGACCAGTAGCTTCGAGATTCCACTTATAGCTGCTTCCACTTCATCTGGTTCCTTTGACCCTCTCAACCCACAGTACTC
CCCTGCTGCAACTTGCGTCTTCTTCGACGTTGCAAGAACTTTCTCCAAATCCAGCTGTGACAACGGCCTAGGGACAGGACATGGTC
TCCCTTTTCTCTCTTCCTCTAGGATCTCTCTGATAGGGAAGTAAGCCGCTTTCTTGCAGAGCTCGAAGATGTCTGATCCGGTGTAG
CCTTCACATAAACGAGCTACGTGGTCATAGTCAATATCGGGCTCCACCCTCTCTCCTTTCAGTGTCACTTTCAGTATCTCTGCTCT
CTCCTTGCGATCAGGCATTCCAATCTCAAAGGCTTGAGGAAGACGCCTCAATATCGCTTCATCGAGCTCTGATGGTCTGTTAGTTG
CAGCAAGAACCATCACCCTCGCATTCGGATCAGTAGAGAAACCATCCCATAAAGCCATAAACTCAGTCTTCATGTTTGCCATGGCT
TCATGATCTGTAGAACGGCGCTGGCCAAGAAAGCTGTCCACCTCATCGATAAAAATGATAGCAGGTTGGAGTTTGTACGCCAAGCT
AAACACAGCAGCAACAAGCTTCTGAGCATCACCAAACCACTTGCTCATCAGATTAGAGACCCTAACATTAATGAAAACAGCTCCCG
ATTCTTTAGCAATAGCCTTAGCAAGCATTGTCTTCCCTGTACCAGGAGGCCCATAGAGCAAGACGCCCTTTTGAGGTCCAAGGAGC
TTCCCATAAGCAAAAAGCTCAGGCCTTTTCGACGGCAAAATCACAAGCTCATACAAAGCCTCCTTGATGGTCTCCAACCCTCCGAT
AGAACCAAACTCCACATCGATATGGTCTGGATTAATCACATCACGTGCTATCACATCCTCGTATGGAGTAGTGTGAATAAGAGGAC
GACCTAGACGCTTGGAGATTTCTTTCTTATGCTCGAGAGCTTTCTTAGACGCCTCGCGATTAGGGTCGAGGTGTCTGAGCCCGGCA
AATAGAACCAAGCAGCTGAAAGCAGCGCTCGCCGCGTGGAGTATGAGTTCTTGCAAGATCTTCGTCTCCGACGAGCCACCACCCAT
TTCTCTTACAAGAAATTTTTAAAAAAGAACACAACCTAGGATTATATGTTTGCAGAACACGGGGAGAGACTCTTGCTCTTCTTGTG
GACGACGACAGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_194498 26S proteasome regulatory particle chain RPT6-like protein [Arabidopsis thaliana] | 1807 | 1e-199 |
| XP_002869548 hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp. lyrata] | 1781 | 1e-196 |
| XP_002271615 PREDICTED: hypothetical protein [Vitis vinifera] | 1595 | 5e-175 |
| XP_002865978 hypothetical protein ARALYDRAFT_495431 [Arabidopsis lyrata subsp. lyrata] | 1576 | 8e-173 |
| XP_002321379 predicted protein [Populus trichocarpa] | 1554 | 3e-170 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8NBU5 ATPase family AAA domain-containing protein 1 | 705 | 3e-073 |
| Q9D5T0 ATPase family AAA domain-containing protein 1 | 705 | 3e-073 |
| Q505J9 ATPase family AAA domain-containing protein 1 | 705 | 3e-073 |
| Q503W7 ATPase family AAA domain-containing protein 1-B | 700 | 1e-072 |
| Q7ZZ25 ATPase family AAA domain-containing protein 1-A | 697 | 3e-072 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9T090 26S proteasome regulatory particle chain RPT6-like protein | 1807 | 9e-200 |
| B9IDK9 Predicted protein | 1554 | 2e-170 |
| C6T7L1 Putative uncharacterized protein | 1540 | 8e-169 |
| Q9FJC9 26S proteasome regulatory particle chain RPT6-like protein | 1539 | 1e-168 |
| C6THI0 Putative uncharacterized protein | 1525 | 4e-167 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G27680.1 MSP1 protein, putative / intramitochondrial sorting protein, putative | 1807 | 5e-202 |
| AT5G53540.1 MSP1 protein, putative / intramitochondrial sorting protein, putative | 1539 | 6e-171 |
| AT4G02480.1 AAA-type ATPase family protein | 737 | 5e-078 |
| AT1G02890.1 AAA-type ATPase family protein | 726 | 1e-076 |
| AT4G24860.1 AAA-type ATPase family protein | 718 | 9e-076 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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