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Information for unigene UN18342

FASTA Sequence
Unigene ID: UN18342Length: 1433 SSR 
ATCAAAAAATTAGTTTTCAGTTCTTTTATAAAATATTATTGCAAAATACATAAGCAACCAAATGAAAACATAAGACTTTGTTCTTG
TTTGCGTTTTATGTTTATAAATTAACAAATGAACTTTGTTTAAAAACCATACTTTTAAAAAGAAAATATGCAAACACAAACGCAAA
CCATGGTTCAAGATTCCAACATACTTAGAGCTGCTGTTTCAGTCAGCGCTTGACGATACCTCATTAGAATCAGGAGGAGGCACATC
TTCCTCCTCGCTATCATCATCATCATCACTATTTTCTTCTCCACTCACGCCTTCACTAACCATCGGACCTAGAAGGAAGCCGATAG
ACTCGATATTGACCAGAAACTGAGGAACCTGAGCGAGCTCAAGCCTGTGGTCTGGGGTGTGTTGTTGGTTGAATCTCCCTGGAACT
TTCGAAGGAGTCTCGTAACAGTCTTTGCATAGGTCATAACCAATCTCTTCCTTGCAGTCTTTGCATCTGTATCGCTCCCCTATGAT
TGGATACACTCCGCAACAATCACAACCAGCTCCGATGTGAACATTAGACGCAGGGTTCGCCCACCAGGGAAGGTCATTGTTGTTCT
CGCCTGATACGGATGGGCCTTCTTTGTGAGAGCTTTGACTGTTTCCTTTGCTAGTCTGGGGAATCGATTTCTGAATCCCACTTCTC
CTTGAATTGTATTCTTGAGGAAAGTTCTCCTCCAGAAGCTGCTCAAGAACCAAACAAACTTTAGGAAACCCTCTCGGGTCAGAGAT
ATGACAGTCTAGACATTTGATCTTTTCGCCTTCTTGAAACATATCTACTACACATCCTTCACAATACACATGTCCGCAGTTGAGAA
CAACGGGTCGCACAAGCAGCTCCTTACATGCAGAACAGAGCAAATCATCTTTCGAAATTTGCTTACTGACTTTATTATTAGAGCAC
TCTTCCACCTTCTGCTCATCTCCACTAGATACAGACTCTTCCTTAGCCTTTGGTTCATCAATCTGAGGTGAAAAGCATTCTAGTTC
TTGTTCCTCCTTTAGAACTTGTTCTTCTCTCTTGTGGTGGGCAAGAGGGTAAATCTTCTTGAGGAGGAAGTGGAGCTTTTGGCAGA
CAGCAGGAAAGTGAACATAAGGGTCTCTACAAATGGGACAATGAGACTCACGCAGCTCGTTCATTGACTTGTGTACGCACCAGAAA
CACGATAGGTGACCACATGATAGCACAATCGGTTTGTAAAGAAGTTCCAGGCAGACGCAGCAGAGAAACTTGTCGGAGATTTCTTC
GTGTAGCTCAGCGTTCTTCATTGTAACATCCTCCATAGGTAGGGAGAGATTGGGGATTGAGAAATCAAAACTTTCTGCAAAATTAT
CAAAACAGGAAAATAGAGAGAGAGAGAGAGAGATCTGAGATTTCGACGGTGCGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_189124 E3 ubiquitin-protein ligase PRT1 [Arabidopsis thaliana]9664e-102
AAM64697 PRT1 [Arabidopsis thaliana]9639e-102
XP_002883562 hypothetical protein ARALYDRAFT_479998 [Arabidopsis lyrata subsp. lyrata]9494e-100
BAJ99683 predicted protein [Hordeum vulgare subsp. vulgare]8392e-087
ABK94910 unknown [Populus trichocarpa]5507e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q8LBL5 E3 ubiquitin-protein ligase PRT19662e-103
Q9NZS9 Bifunctional apoptosis regulator1561e-009
Q8R079 Bifunctional apoptosis regulator1542e-009
Q5PQN2 Bifunctional apoptosis regulator1533e-009
Q5D7I6 Tripartite motif-containing protein 51264e-006

TrEMBL top hits (Blast detail)Scoree value
A9PEV7 Putative uncharacterized protein5505e-054
B9GQH3 Predicted protein (Fragment)5488e-054
B9S532 Putative uncharacterized protein5041e-048
B8AFI4 Putative uncharacterized protein4743e-045
B9H0A3 Predicted protein4734e-045

Arabidopsis top hits (Blast detail)Scoree value
AT3G24800.1 PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase9661e-104
AT1G74990.1 zinc finger (C3HC4-type RING finger) family protein1282e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  17%
 
82  33%
 
113  50%

Unigene MembersMember information