RadishBase

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Information for unigene UN18355

FASTA Sequence

Unigene ID: UN18355	Length: 1110	SSR
CTAACAGTGTTTCTATTCATAAAAATGGGCGCCAAGAAAGTTTCTAACAGCGTTGTTCAAAAAAAAAAAAAAAAAAGGAAGTTTCT AACAGCTTACAAGAAGTAAACTAGCTAGGTTTACAAGATTCTTCTGGCACAAGAAAGTTTCTATTCAGTATTCAAAGACCAAAGCA CACAATGCAGCATCAACAAGCTAGTTGATCTCTAAGTGGTAAGATCTCTTCGAAAATCGGAAGTCTTCTAATTGTCCTCCTATAAG GCCTCCTCCATTCACTTTCCACAGATACAGAAGCTAAAACAGCTGCTGCTTCCCGACTCTCTAGCTCACTCAACAGCTCTTGAACT CGAACCTTCAACCTCAAATCATCACCAAACTCTTCTTTCTTCTCCTGTAACACATCACGAAAGAGAACTGATCTAGCCTCAACGAG CTTCCCTTGCTTGATAAGACATGAGCATAGATTACAAGCCTTGTTTGCATCTGGCTCAATCCCTTGAGCCTTGCGGTACACGGTTT CAGCCGATGTATAGTCCTTTAGCTGCATATAAGCCCATCCCAAGTTTCCCAAGATCCTAGATGTCTCCTTCTGGACCGTGACCTGA AACTTCTTCCCGTGAGATCTAGCTGTCTTTGTAGGCTTGCCGTTGAATGCTTCTCCTTGATATAAAATCCAAAGCTTTTGCTTCAA CAGCTCAACTTGCTCTTCTATCCTCCCACACTTCTTGTAGAGATCGATGAGGACATTGTCGAGTGATCCTTGAGCTTGCCTCGAAC ACAGACATCTAAAGGATGAATAGCATCAATAGCTTCATCTGATCTGTTCTGTTGTTTCATAAGCAAAGCCATGTCTTTAAGAGCAC TGTCCACTCTGTCTCTCGCTTTGATCGCTCTCCAGAACAGCTCTATCGCTGCTTCCGCATCTTTCTCCACAAGCTGAACATGCTTA GCTCGGACGTAAGGACTGTCACCGTGAGGGAGCTTATGAACAACGTTGTAATCTTGTCTCTCTCCTCCTCTTGTCAGACTCATCAT CACAAAAGACTCTTTCTTTCTGTCCAAAATTCTAAATGAAGAAACAAACTTTCTCTCTCTCTCTTCTAAAAGCGGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002892240 male sterility MS5 family protein [Arabidopsis lyrata subsp. lyrata]	711	1e-072
AAF40459 Strong similarity to the beta-9 tubulin gene (178 gene product) gb\|AF060248 [Arabidopsis thaliana]	707	3e-072
NP_171969 male sterility MS5 family protein [Arabidopsis thaliana]	707	3e-072
BAE99325 hypothetical protein [Arabidopsis thaliana]	707	3e-072
CAN73753 hypothetical protein VITISV_002585 [Vitis vinifera]	598	1e-059

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q0WU73 Putative uncharacterized protein At1g04770	707	2e-072
Q8L730 At1g04770	707	2e-072
Q9MAS6 F13M7.24 protein	707	2e-072
A5AT37 Putative uncharacterized protein	598	9e-060
A2Y6B0 Putative uncharacterized protein	585	3e-058

Arabidopsis top hits (Blast detail)	Score	e value
AT1G04770.1 male sterility MS5 family protein	707	1e-074
AT5G48850.1 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1); binding	554	6e-057
AT3G51280.1 male sterility MS5, putative	420	2e-041
AT5G44330.1 male sterility MS5 family protein	309	2e-028
AT5G22794.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1).	270	5e-024

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			67%


7	1			33%

Unigene Members	Member information