RadishBase

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Information for unigene UN18439

FASTA Sequence

Unigene ID: UN18439	Length: 1025	SSR
GTACGTACAAAGTAACAAAATGATTTAAAAAGATTCCAAAGCCTGTTTGGTTTATAAAGATCAGGCTGTTCAATCTCAAATGCACC GGTTTAGTTGTTGCCTTTTTGGTAAGGACAAAGTGGCAAGACGTAGAGAGAGAGAGGAAAAAAGAGAAACTATACATTCTGGTGTA TCCATTTGCAGAGATTAATAAAAGCAAGAGTAGTTTCTGAATCACCAAATCACATGAGATACATCTTTGAGGTCTGTTTTAACCAC AACAGCCACCTCCCTGTGCGATCGCACCGTCTCTTCCTCCAGCTGCACCTTGAGGACGCCCGTAACCAATCTTTATGCCCGATGAC TCGTTGGATACATCAAAGACACCGTCCTGAATATTCTGGAGGATCTTTGCTGCAGTCTTTATGAAAGCCTCCTCAACGTTTTGAGC TGTTCTTGCAGAAGCTTCTAAGAACAAGAGTCCATGTTCTTTGGCAAACTGTTCTCCTTCCTCTTTGCTAACAGCTCTCTTGTGAG CAAGATCGCATTTGTTCCCAATCAGCATAATACTCATGTTGGGATTAGCATGTTGCCGAGCATCCTCTAACCAGCTCGCCAGATGG TTAAACGTCTCTCTCCTGGTGATGTCGTAGACAAGTAAAGCTCCAGCTGCTCCTCTGTAGTACGACCTAGTGATGGATCTAAATGA CTCTTGTCCAGCGGTGTCCCAAATTTGGAGTTTGATGGGACGACCATCGACGGTGACCATACGAGCACCGAACTCGACACCAATGG TGAGATCGTGGACTGGTTGGAACCTCTTGTCAGTAAATTGCAGAAGCAAGCAAGATTTCCCCACACCTGTGTCGCCGATGATGATG TACTTGAAGAGGTAATCGTAAGACATGGCTCTCTGATGAATTGGGAGCAAGGTGGATGGATGATCGCTTAGAGAGGAAGAAGAAGA GATGGAGGAGAGTTACAAGTCACCGACGAGCTTTTTCGGTTTTTATTTTCGAGGTTTCTCGATGGGGAAGTTATCTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867050 GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]	1082	9e-116
NP_195311 GTP-binding protein GB2 [Arabidopsis thaliana]	1076	4e-115
XP_002312839 predicted protein [Populus trichocarpa]	1037	1e-110
XP_002526048 protein with unknown function [Ricinus communis]	1037	1e-110
BAA88497 small GTP-binding protein [Carica papaya]	1020	1e-108

Swiss-Prot top hits (Blast detail)	Score	e value
P49104 Ras-related protein Rab-2-B	938	2e-100
P49103 Ras-related protein Rab-2-A	916	7e-098
Q39570 GTP-binding protein YPTC4	903	2e-096
P36863 GTP-binding protein yptV4	901	4e-096
Q01971 Ras-related protein Rab-2A	846	9e-090

TrEMBL top hits (Blast detail)	Score	e value
Q38922 ATGB2	1076	3e-115
A9P8X5 Predicted protein	1037	1e-110
B9SJ79 Putative uncharacterized protein	1037	1e-110
Q9SLP2 Small GTP-binding protein	1020	9e-109
C6TDU7 Putative uncharacterized protein	992	2e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35860.1 ATGB2 (GTP-BINDING 2); GTP binding	1077	1e-117
AT4G17170.1 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase	983	1e-106
AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding	834	2e-089
AT4G17160.1 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A); GTP binding	781	3e-083
AT1G06400.1 ARA-2; GTP binding	497	2e-050

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			20%


12	3			20%


11	8			53%


19	1			7%

Unigene Members	Member information