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Information for unigene UN18467
| FASTA Sequence |
| Unigene ID: UN18467 | Length: 1650 |
SSR | | GGATTTCTCCCTCCATCTCCCTCTCCTCTCCTCTCCTCTCCTCTTCCTCCGAAGAAGAAGAAGACGATCGCAAGGGATTAGGATCT
CTTCTGCTGTGAGCGAAGGAAGAAGATGAGGGAGATTATTAGCATTCATATCGGACAAGCCGGGATCCAAGTTGGAAACTCGTGCT
GGGAGCTTTACTGCCTCGAACATGGCATCCAGCCTGATGGCATGATGCCCAGTGATACTACGGTTGGTGTTGCACACGATGCGTTC
AACACGTTTTTCAGCGAGACTGGTGCTGGAAAGCACGTACCTAGAGCTATCTTCGTTGATCTCGAGCCTACCGTTATCGACGAGGT
CCGTACCGGAACGTACCGGCAGCTTTTCCATCCTGAGCAGCTTATCTCTGGTAAAGAAGACGCTGCTAACAACTTCGCCAGAGGCC
ATTACACTGTTGGGAAGGAGATTGTGGACTTGTGTCTTGACCGTGTGAGGAAACTCGCCGATAACTGTACTGGATTGCAAGGGTTC
TTGGTGTTTAATGCTGTTGGTGGTGGAACTGGTTCTGGTTTGGGTTCTCTCTTGTTAGAGCGTTTGTCTGTTGATTATGGTAAAAA
GTCTAAACTTGGCTTCACCATTCACCCTTCTCCTCAGGTTTCTGCTGCTGTTGTTGAGTCTTACAACAGTGTTCTTTCAACCCACT
CTCTACTCGAACACACCGATGTTGCTGTCCTCTTGGATAACGAAGCCATCTATGATATTTGCCGCAGATCCTTAGATATCGAGAGG
CCTACTTACACGAACCTCAACAGGTTGATATCTCAGATCATATCGTCCTTGACAACGTCGTTGAGGTTTGATGGAGCTATTAATGT
GGATATCACCGAGTTCCAGACCAATCTTGTCCTTTACCCCCGTATCCATTTCATGCTGTCCTCTTATGCTCCGGTTATCTCAGCAG
CAAAGGCTTACCATGAGCAGCTTTCGGTCCCTGAGATCACTAATGCCGTGTTTGAGCCAGCTAGCATGATGGCCAAGTGTGACCCG
AGGCACGGGAAATACATGGCTTGTTGTTTGATGTACCGTGGAGATGTTGTTCCTAAAGATGTTAATGCTGCTGTCGGTACTATCAA
GACTAAGAGGACTGTTCAATTTGTTGACTGGTGTCCCACCGGTTTCAAATGTGGAATCAATTACCAACCTCCAACAGTTGTTCCTG
GAGGCGACCTCGCTAAGGTCCAGAGAGCGGTCTGCATGATCAGCAACAACACAGCCGTTGCAGAGGTGTTCTCACGGATCGACCAC
AAGTTTGATCTGATGTACGCGAAGAGAGCGTTTGTGCACTGGTACGTTGGTGAAGGAATGGAGGAAGGTGAATTCTCAGAGGCACG
TGAAGACTTGGCGGCACTGGAGAAAGATTATGAAGAAGTTGGTGCTGAAGGTGGAGACGATGAGGAAGATGAAGGTGAAGAGTATT
GACACCTTCTTCTCTCAAGCAATGTGCAACCAAAAACGTTTTTCAAATTTCTATTTCTACTTATGATTCTTGTGGATTACATGTTT
CTTTTTAATCCTGTACAATATTCGTTGCACTTCCTGTTTTTATTTTGGTTCATTCATTTGGTAAAGCGACCGTTGAGAATTTAAGT
GTCCATTTCTGTAACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197478 tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] | 2336 | 7e-261 |
| NP_001060075 Os07g0574800 [Oryza sativa Japonica Group] | 2288 | 2e-255 |
| O22349 RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulin | 2282 | 1e-254 |
| ABD92942 alpha tubulin-1D [Triticum aestivum] | 2280 | 2e-254 |
| NP_001105588 tubulin alpha-6 chain [Zea mays] | 2279 | 3e-254 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P20363 Tubulin alpha-3/alpha-5 chain | 2336 | 3e-262 |
| P28752 Tubulin alpha-1 chain | 2288 | 1e-256 |
| O22349 Tubulin alpha-3 chain | 2282 | 5e-256 |
| P33627 Tubulin alpha-6 chain | 2279 | 1e-255 |
| Q43473 Tubulin alpha-1 chain | 2275 | 3e-255 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2YMX5 Putative uncharacterized protein | 2288 | 2e-255 |
| Q0PVB0 Alpha-tubulin | 2288 | 2e-255 |
| A4K4Z3 Alpha tubulin-1A | 2280 | 1e-254 |
| C0PKT5 Putative uncharacterized protein | 2279 | 2e-254 |
| B9T1E6 Tubulin alpha chain, putative | 2277 | 3e-254 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19770.1 TUA3; structural constituent of cytoskeleton | 2337 | 2e-263 |
| AT5G19780.1 TUA5; structural constituent of cytoskeleton | 2337 | 2e-263 |
| AT1G04820.1 TUA4; structural constituent of cytoskeleton | 2239 | 4e-252 |
| AT1G50010.1 TUA2; structural constituent of cytoskeleton | 2239 | 4e-252 |
| AT4G14960.2 TUA6; structural constituent of cytoskeleton | 2236 | 1e-251 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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