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Information for unigene UN18474

FASTA Sequence
Unigene ID: UN18474Length: 1363 SSR 
GGAAAGCCAATCATATCGCGACTTGTGACAAAACCTGTCGAGTCTCGAGAAGGTTCTTTCTTTCATCGTCCTCTCGGAGAATTTTA
GCATAAAGAGTTCAAAGAAATTACTCCATCAATTTGGAACACGATCAAATTTTATCGACCTTTTTCAAGTGTTAATTATTGCAGAT
TTACTTGTTGGTGTTCAAAGGAAAGATGCAAGGAGGTGGTAGAGATCCTTTCAACTTTGGTGGTGGCCCTTTTGGTAGCCCTTTTG
GTGGTGGCCCTAACAATGGACCTCGGAGTCTCATGTCTAGCTTTTTCGGAGGAAGAGATCCGTTTGATGACCCTTTCTTCACCCAG
CCTTTTGGTGGTGGTGGTGGCGGCATGTTTCAGTCCAACTTCTTTGGTCCTGGTCCTACCATGGATCCTTTTGCTGGAATGCGTCC
TCCGTTAGGTTTTCTCGAGAATCATCATCATCATCAACAGCCACCACAACCGAGAAGGTCTCATGGACCGGTTATCGAAGAGATTG
ATTCAGATGATGATGAGAAAGAAGGAGATGGAGTCCAAGAGCAGAGAGTAAGGCTAGGGAAACATGGCAGGTCAAGCAGTGAGATT
GAAACCGAAGAAGCTAGAGCTGAAGAGAGAAGGAACAGACAAATGCAAAACATGAATGTCAATGCTGCTATGGCGACAATGGACGG
TGGCAACCACAGACTCGTAGTTACAGTTTCCAGAGCTCCACTGTTACATACGGTGGTCATAACGGAAACTACTATACTTCATCCAA
GACCAGAAGGACAGGAAGTGATGGGTTAACTCTTGAAGAAAGCAAAGAAGCTAATACCGCAACACGCGAAGCAGCGCATAGGATTT
CAAGGGGCTTACATAACCAGGGCCACACAGTTGCGCGTAAACTTAACTCAGATGGTCGGGTTGATACAACGCAGACCTTGCACAAT
TTAAATGAAGATGAGTTGGCTGATTTTGAGCAGACTTGGAGTGGAAATGCTAGAATGCAGTTACCTGGTTGGTCTGATTCCTTTGG
CAGTGGTCTTGTAAACAGAGAGCAACCAATGTCGCTTCCTTCAACTGATCCAAGCTCTTCTTCACGTGCAAGAGCAGAGTCATCCA
GAAGAACAAATGCTGCAATGAATGTTAGAGGACAGGGCAGAAACTAAACTCTTAGGACTATCATGTCCTGTTAGTGGTGAATGTAA
CCAAAGACTATATATTATCTACTTTACCTAGGGGTGCATCGTTACTGTAAGCCCTGTATGATGACATTATTTGAGGCTTTTATGAT
AATGTTTTTATTACATCAACCTGTTCTTAGCTGCTTGTAATCAAGTAGATCAAGGGTTTTCTTTGCCATAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867755 hypothetical protein ARALYDRAFT_914337 [Arabidopsis lyrata subsp. lyrata]7272e-074
NP_567666 glycine-rich protein [Arabidopsis thaliana]7083e-072
AAM63274 unknown [Arabidopsis thaliana]7031e-071
XP_002509615 conserved hypothetical protein [Ricinus communis]4621e-043
XP_002437774 hypothetical protein SORBIDRAFT_10g002370 [Sorghum bicolor]4602e-043

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q940N4 AT4g22740/T12H17_1307082e-072
Q8LDD6 Putative uncharacterized protein7038e-072
B9RBT1 Putative uncharacterized protein4627e-044
C5Z3E7 Putative uncharacterized protein Sb10g0023704601e-043
C4JA82 Putative uncharacterized protein4592e-043

Arabidopsis top hits (Blast detail)Scoree value
AT4G22740.1 glycine-rich protein7099e-075
AT4G22740.2 glycine-rich protein7099e-075
AT2G45380.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT4G34070.1); Has 72 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).3371e-031
AT2G45380.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G22740.2); Has 48 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).3371e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  33%
 
82  33%
 
92  33%

Unigene MembersMember information