 |
Information for unigene UN18485
| FASTA Sequence |
| Unigene ID: UN18485 | Length: 1185 |
SSR | | GGATCTTCTTCCCCAATATTATCATCATTCCCTTCCGATCAAAATCTCAGCTTTAACTCATCTCATCTCAGAAAGCTTCTTTCTTA
CTCAAGAAATATAAACAAACCTATTCCAAAACCCTAAAAATGGTGACCATGGGTCAACTATGGGCTAACACAGGCTCTGCTCTAGC
AACCCTAATGTTTGTATACACAATCTTCAAACAATGGTTCCCTCACGTTGGAGACCACTTGGAGCCATTCTTTCAAAGAGTCTTCA
GCCGTTTCTACCCTTACATCCAAATAACGTTTCATGAGTACAGCGGAGAGCATTTCAAGAGAAGCGAGGCCTACTTAGGGATCCAA
AGCTATCTCAGCAAAGACTCTTCTTCTCGAGCCAAGAAGCTTAAAGCCAACACAACCAAAGGAAGCAAGTCTCTTGTCCTTAGCAT
GGATGATAAGGAAGAGATAACAGACGAGTTCGAGAACATTACGGTCTGGTGGCAGTCCAAGAAAGAGGGGAACATTAGGCAATCGT
TTCTCGTTTTACCCTGCGGCTGATGAGAAGAGATACTACATGTTGAGGTTCCATAGACGTGACCGAGAAGTCATCATAGAGAGGTA
TCTTGAGCATGTTATGAAGGAAGGGAAGACGATAGAGCTGAAGAACAGAGAGAGGAAGCTTTATTCGAATACTCCTGGACAGAACC
ATGGGAACCAAACAAAGTGGAGTCATGTAACGTTTGAGCATCCAGCGACTTTTGATACTCTAGCTATGGAGGAGAAGAAGAAGGAA
GAGATCAAGAGCGATCTCATTAAGTTTAGTAAGAGCAAAGATTATTACAAGAAGATTGGGAAGGCTTGGAAGAGAGGGTATCTCTT
GTTTGGACCACCTGGGACCGGTAAATCAACCATGATTTCTGCCATGGCAAACTTCTTGGAGTATGATGTTTATGATCTTGAGTTGA
CGACAGTTATGGATAACACACAGCTGAGAAGAAGAGGAGAAAGGAAAAGAAAGCAGAGAAGGAGGCAAAGGAGGAAGAGGAGAAGA
AGAAGAAGAAAAAGATTGAAGAAAATGGTGAAGCAGAGCACTGAATTTGAAGGAAAAATCTAGTTACAGCTCTTATAAAGCATTTA
AGTCTTTTCCATCTCGTGAATAATTCTTGATCAGTTTAAGCTAATCAGAAGATTCAGAAATTTGTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189499 AAA-type ATPase family protein [Arabidopsis thaliana] | 778 | 2e-080 |
| NP_198817 AAA-ATPase 1 [Arabidopsis thaliana] | 689 | 4e-070 |
| XP_002333987 predicted protein [Populus trichocarpa] | 618 | 7e-062 |
| XP_002305194 predicted protein [Populus trichocarpa] | 615 | 2e-061 |
| XP_002517441 ATP binding protein, putative [Ricinus communis] | 595 | 3e-059 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54DY9 Probable mitochondrial chaperone BCS1-B | 153 | 2e-009 |
| Q9P6Q3 Probable mitochondrial chaperone bcs1 | 143 | 4e-008 |
| P32839 Mitochondrial chaperone BCS1 | 141 | 6e-008 |
| Q9CZP5 Mitochondrial chaperone BCS1 | 140 | 8e-008 |
| Q7ZTL7 Mitochondrial chaperone BCS1 | 135 | 3e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LJJ7 Mitochondrial protein-like | 778 | 1e-080 |
| Q9FLD5 Similarity to AAA-type ATPase | 689 | 3e-070 |
| B9NFF2 Predicted protein | 618 | 5e-062 |
| B9H368 Predicted protein (Fragment) | 615 | 1e-061 |
| B9RUJ6 ATP binding protein, putative | 595 | 2e-059 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G28580.1 AAA-type ATPase family protein | 778 | 7e-083 |
| AT5G40010.1 AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | 689 | 2e-072 |
| AT3G28540.1 AAA-type ATPase family protein | 544 | 1e-055 |
| AT3G28540.2 AAA-type ATPase family protein | 544 | 1e-055 |
| AT3G28510.1 AAA-type ATPase family protein | 542 | 2e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
