RadishBase

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Information for unigene UN18517

FASTA Sequence

Unigene ID: UN18517	Length: 1481	SSR
AGAGATAGAGTGTGCATGTTTGGACTTTTCTGGATTGTCTATTCATATTTTTATCCATCCATCCATCTATACTTCTGAAATGGTCT TTAGAATATTTTTTATTTGCTACCAAAGAAATATTTTATAGGTATTAGCTTTGGGGAAATAAAAAGTGGAAGTAGAGATGATGAAG CTTTTGCATCTGTTCATAACTTCATCGAAACCAGTTGTGGAGATTCTGATGATAACATCAGTTGGATTTTATATGGCTCTGGATGG TGTCAATCTTCTTGGTCCAGATTCTCGCAAATATTTGAACGACATTGTCTTTTATGTGTTTAATCCTTCGCTTGTTGGGAGCCGTT TAGCTGATAGTGTTACATATGAAAGCTTGGTGAAAATGTGGTTCATGCCGGTTAATCTTCTGCTCACATTCATCATTGGTTCGTTC TTAGGCTGGATTGTTATCCTCATCACTAAGCCTCCTCCGCATCTCCGTGGTCTCATCGTTGGTTGTTGTGCTGCTGGTAACTTGGG AAACATGCCATTAATCATAATCCCAGCTGTTTGTAAAGACGTAGAAGGTCCATTTGGAGATCCTGAGAACTGTCACAAGTATGGAA TGGGTTATGTTGCATTCTCCATGGCCATTGTATCAGTTTACATATGGACTTACGTATACAATCTTATGCGTGTGCTATCAAAGTCT CCCACTGAAGCACAACCTTCTATTGAATCCAGCTATAAAGTCCCTCTGATATCTTCCAAAGAAGAAGAAGAAGAAGAAGATAACCA TAAGGTCGGGAGGTGGGACAGATTCAAGAGAAGAATGGTTTCACTGTCGGAGAAAGTAAACTTAAGTATAATATTTGCTCCAACAA CTATTGCTGCGATAATCGCGCTTGTGATCGGTCTTATTAATCCTTTAAGGGAGCTAATAATTGGCAGCGTAGCTCCTCTTGGAGTG CTTCAAGACTCAGTAACTCTAGTGGGAGATGGAGCCATCCCTGCTACGACCCTGATCATTGGAGGAAACCTACTCAAAGGTATGAG AGCTCAGGAATGAAAAAATCAAGCATTGCCGGTGTCTTGGTTGCACGTTACATTCTCCTGCCTATAAGCGGTGTTTTAATCGTAAG AGGAGCATACAAGTTGGATCTGATTACCTCAGAGCCGTTGTACCAATTCGTTCTGCTTATTCAGTATGCTGTACCACCAGCAATGA GTCTAGCTTACTTGGCAGGTACGATAACTCAGTTATTTGGAACTGGGGAAAGTGAATGCTCAGTAATAATGCTATGGGCTTACGGT TTTGCTTCTGTTTCACTCACTGCTTGGCCCACATTTTTCATGTGGCTTGTGGCTTAAACCCCCCACACTTGATCTTGATAAATGTA TTATTTTGTTCCATTTATTTAAGATTTGAACTTCTAGACTATTTGATCATGTGTATTACTTAAGACCATCAATACCTGTAGTTTTA TTATATAGTTTGGCTAACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002887644 hypothetical protein ARALYDRAFT_895536 [Arabidopsis lyrata subsp. lyrata]	1226	3e-132
AAM62517 unknown [Arabidopsis thaliana]	1221	1e-131
NP_565133 auxin efflux carrier-like protein [Arabidopsis thaliana]	1221	1e-131
XP_002890416 auxin efflux carrier family protein [Arabidopsis lyrata subsp. lyrata]	979	1e-103
NP_683316 auxin efflux carrier-like protein [Arabidopsis thaliana]	976	3e-103

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8LER0 Putative uncharacterized protein	1221	8e-132
Q9C9K5 Putative uncharacterized protein At1g76520	1221	8e-132
C0Z2W2 AT1G76520 protein	876	8e-092
B9SRA8 Auxin:hydrogen symporter, putative	760	2e-078
B9I0L3 Predicted protein	734	2e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT1G76520.1 auxin efflux carrier family protein	1221	4e-134
AT1G76520.2 auxin efflux carrier family protein	1221	4e-134
AT1G20925.1 auxin efflux carrier family protein	976	1e-105
AT1G76530.1 auxin efflux carrier family protein	657	1e-068
AT2G17500.1 auxin efflux carrier family protein	607	7e-063

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	1			25%


9	1			25%


11	2			50%

Unigene Members	Member information