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Information for unigene UN18523
| FASTA Sequence |
| Unigene ID: UN18523 | Length: 1226 |
| SNP | GAAAATATGAACAAAATAAAATACAAAATGATGATATTATGAGAGAGTAAAAGTATCCCCAACAGTTTTTTTCAGTACATTTGGAC
AATAATAATAACTTATTAAATTGAGAGAGAGGTACATCAAATCAAACAGATGACTCACTTTGGCTGTACCTTATTACCATCAAAAC
GAAAACATACAAAAGAAAAACAACAACGAATCAAAAACATATAACACAGCATAGAGCCGGGAGATTCACGACGTTCGCAGGGGATA
AAACTCGATCGATCGAACCAAACCACCGATAAATAGAATACCGACCACTATGATAGTTGTTTGGCTCAAACATACACAAGACAACA
CTTAAAACTTGTGGAGACTCTCTGATAGCTTACCGAGTTTCATCCTCCAAGGCACGGAATCCAGCACTGAGATCCTCGTATAGTTT
CTTGAATTTAGCCACAAGTGCAGCCTCACCTTCTGCTGGATCTTCGAACTTCTGAGATACTAAACGGTAGAAAAGATCTCCCAAGC
GATGCTTGATCAGAGTGTAAGTGATCTTTTGACCGTCCATCCCAGCTGCTCTTTCAACCGCCTGATTGGCTAGGTTGTAGAAATGG
ATAATGTTACGCATCATCCACACAGACTTGTAGAAAGGGCAGAACTTGTCATACGGTGTGAAAGCGTTTTGAGCAAGGTAGTCTTC
CCTCAACAACTTGGCTGTTTCCAAGGTGATTTTGTCACCTTCTGCTAGTGCATCTTTTCCCACAAGCTGGACAATTTCATTAAGAT
CATCTTCCCTCTGCAACACCTCTCTGGCTTTTGTCCTGATGTTGATGAAATCTGGATCGAACTTCTCATAGAAAGATTCTAACGCC
GTCGAACACTTTGAGTAGGAAATCAACCAATTAACAGAAGGGAAATGCTTTCTCTGGGCAAGCTTTTTGTCCAAACCCCAGAAGAC
CTGCACAATACTAAGGGTTGCAGAAGTCACAGGGTCTGAAAAGTCTCCACCAGGAGGTGAAACAGCACCAACAATTGTGACACTGC
CATCACGTTCTGGTCCACCGAGACATTTTACTTTACCAGCACGTTCATAGAAAGATGCTAAACGTGCTGCTAGATAGGCAGGATAT
CCACTGTCCGCAGGCATTTCAGCCAGCCGTCCTGAAATTTCTCTCAATGCTTCTGCCCAACGGGAAGTCGAGTCTGCCATCATACT
AACATTGTATCCCATCTCTCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887760 VHA-A [Arabidopsis lyrata subsp. lyrata] | 1428 | 9e-156 |
| NP_178011 V-type proton ATPase catalytic subunit A [Arabidopsis thaliana] | 1424 | 3e-155 |
| Q9SM09 RecName: Full=V-type proton ATPase catalytic subunit A; Short=V-ATPase subunit A; AltName: Full=V-ATPase 69 kDa subunit; AltName: Full=Vacuolar proton pump subunit alpha | 1419 | 1e-154 |
| BAA89598 vacuolar H+-ATPase A subunit [Citrus unshiu] | 1419 | 1e-154 |
| BAD94121 vacuolar-type H+-ATPase subunit A [Arabidopsis thaliana] | 1419 | 1e-154 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O23654 V-type proton ATPase catalytic subunit A | 1424 | 1e-156 |
| Q9SM09 V-type proton ATPase catalytic subunit A | 1419 | 4e-156 |
| P13548 V-type proton ATPase catalytic subunit A | 1390 | 9e-153 |
| Q39291 V-type proton ATPase catalytic subunit A | 1386 | 3e-152 |
| P09469 V-type proton ATPase catalytic subunit A | 1382 | 8e-152 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WLF6 AT1G78900 protein | 1424 | 2e-155 |
| Q56X25 Vacuolar-type H+-ATPase subunit A | 1419 | 7e-155 |
| Q9MB47 Vacuolar H+-ATPase A subunit (Fragment) | 1419 | 7e-155 |
| B9DHY6 AT1G78900 protein (Fragment) | 1417 | 1e-154 |
| Q5CCU3 Vacuolar H+-ATPase catalytic subunit | 1407 | 2e-153 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78900.1 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | 1425 | 7e-158 |
| AT1G78900.2 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | 1425 | 7e-158 |
| AT1G16820.1 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related | 178 | 3e-013 |
| AT1G76030.1 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit | 171 | 2e-012 |
| AT1G20260.1 hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | 171 | 2e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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