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Information for unigene UN18527

FASTA Sequence
Unigene ID: UN18527Length: 1350 SSR 
GTAAATGGCAACCTTTCATTTGCCTTCTCATACAAGAAAATACATTATAACCCTAAATAAACCGTCACCTTATACATATCTTTTGA
ATAAAAATCAAAACACACCAAAAGACAGTATTTTTTTTAGTTTTTGAAAATAAAACCCCACACACACTTCATTTCTTGTAATAATA
ATAATAATAATTCATCCATCTACCGCTTACGAACGCTTAAAAGCTTAACATCATCGATCACAGGCCCACACAAGGACGAGAAATCA
TCGCTCCTCATGGCATAGAAAGTGCTGTAAAACATAACTCTAGTTCTCGTCGAAACCGCCACGAACCGTATCGAAGCTCGTTTAAA
CCCTCCAGTGCCACGCGACTCGTAAGGAACCTTGAGCGTATCTCTTCCCGCGAAAGCCTCGACCACCATCGATCCTTTGCAGGCGT
TGTTGGCGTCTCCGACCGCGAACGAAAGGACGTAAGTCTTCCCGATGATGGTCCTCGCCACTTGAGCGATGGCGCTCTCTTTGCCC
GCTACCAGCTCGATGGCTCGGCGACCTTGTGGGACTGAGAAGTGTTCCGTGTCTACGTACTTGACGGCTTTGAGTGACTCCACCAT
CCATCCGGGTAAGGGAGTGTGGTCGTCTTCTATGAACGGTGGGATTAAAACTCCTGTGGTTGAGCCTGGTAGTACTAGTGGACCTT
CTTCAAATCCTCCGTTCTTCAAAATGTTCTTGTTTGTTGGTCGTGGAGGGTAAAGAGCTCTCATGGCAACACCATCAATGAGAGGA
CCACAAGCTGGATCCTCTTCTTCACCTGGATTATGAATCACTATCTCAGCGACCTCACTCTCCGCCTGAAACGCCCAAGCGTATAG
ATCCCACCCACTGCTACTGTACACCGTCTGCACAGGAATGACGCCAGAGTCAGGTGCCACGGAGATGTTGAGCCTTTCGTCTTGAG
CGCACGTCCTCGCGGCGCTGAAAGTGAGCGAGTAATACATTCCTTTCACTTTTGATTCTTTGTTTGATCGACGCTTCGTTTCCGAG
CCTGACTGCGAATTTTCCGGCGGGGACGACGAGGAGCATGTCTCCTTGTTTGTGTCCTGAGCTTATGTACTCGACGAAACCCGTGA
CTTCCCAACTCGGGATTGCCATCTTGTTTATTATTTCGGTTCCTTTCATGTCGGATGACTTTGGTCCTAGCTCGAAGTCGCCGTTC
GGTAAAATACCATCACGGAAGGGGACAACGGCGGAATTAGCTGTGGCAATGAGAAGAAGGACGAGAGACACGACGGTGACGCCCCA
CATTGTAAAGGAACACTGGGAAGAGAGAAAAGAGATAAAAGTGTTTATTGTAGAAAGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197928 uncharacterized protein [Arabidopsis thaliana]13356e-145
AAM61720 unknown [Arabidopsis thaliana]13302e-144
AAL06839 AT5g25460/F18G18_200 [Arabidopsis thaliana]13293e-144
XP_002872166 hypothetical protein ARALYDRAFT_910605 [Arabidopsis lyrata subsp. lyrata]13275e-144
NP_196703 uncharacterized protein [Arabidopsis thaliana]13042e-141

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q94F20 At5g2546013354e-145
Q8LEX7 Putative uncharacterized protein13302e-144
Q940Q9 AT5g25460/F18G18_20013292e-144
Q9LYE7 Putative uncharacterized protein At5g1142013042e-141
Q8H168 Putative uncharacterized protein At5g1142013014e-141

Arabidopsis top hits (Blast detail)Scoree value
AT5G25460.1 unknown protein13352e-147
AT5G11420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25460.1); Has 185 Blast hits to 157 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).13049e-144
AT4G32460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).11901e-130
AT4G32460.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).11901e-130
AT1G80240.1 unknown protein9312e-100

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  60%
 
101  20%
 
81  20%

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