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Information for unigene UN18543
FASTA Sequence |
Unigene ID: UN18543 | Length: 2048 |
SSR | | GGGGTCTCTGCCTGCGGCGGTTTCTCAATGTCGAAGCAGGTGCAGTTGCCGGAGAATTTCCTTAGCTTCTTAGAGGGCAATGGCAT
CGATCCTTCAATCTATAATCAAGGAGATTCACTTCGACGCTATGTAAGGTTGAAACCTGGGTTCGAGGATGCTGTCCAAGAGATTG
AATCTGAAATTAGCTGCAAGCTGGAGCAGCTGGATTGGTTACCCGGATTTTACTCAATTCCTTCACATGTTCATATAGCGAGATCC
AAGGCGTATCAGCAAGGCAAGATGTACGGAATCGACGCAGCTTCAGGTGCTGCTGTTTCAGCTCTTGGTATCTCCCCTGGAGACCA
TGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTGTGTATGATGCTAGACCTACTTGGTGACAAGGGTACTGCAACCGGTGTCG
ATGTTGCAAGGCATCGCCTCTCTGCCTGCAGAACCATGCTTCAAAAATATGGTCTCGGTGATAGGAGTCGCCTCTTCCTTGCTGAT
GGAACTACTTTCTCACTTCCACCTACCCCAAACCTACCTTGTGGTTCATGTGATGAAGAGACGTTCAAGCAGTGGACTTCTCGTAG
ACCTTACAAGGAAAGGAAACAATTAGCCAAGACCAGGAACAACTTTGTTTTGCCGCATCCCGAAATTATTTTCTACGGACAGAATT
CTGGAGTAATAGGGCTACAAAAGAAGGAGCTTTTTAGATCCCTTGACCAAAATGATTATGCAAATTGTGGATATGACAAGGTTCTT
GTAGACGCAGAGTGCACACATGATGGTTCAATCAAGCATATCCAGAAGTTTGAGCAATGGGGCTGGACAACGTTGGAACGCCGTGT
ACTGGATGCTGAGAGAACCGATACAAACTTGACTGCTCTTCAGTTAAATCTACTGAGAAATGGATTCAGATTGTTGAAACAAGGTG
GCATTCTTGTATACAGCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTGCTGAAAGCTCCTCCGCA
GAGCTGCAGGAGATTGAAATGGCCAGGGAATGGCCGTGTAGAAGCGGACGCACTCCAAAAACAGTGCGTTTCGACCCTTCTACCTC
AGCAACCAGCGGTCTCTTTGTTGCGAGAATCAAGAAAATGGCACCCAAAGAAGCAGAGAAGGATGTGCTGTGATGAATGATGACTC
TATTTTAAGTTTTTAACTGTGAAGAATAGAAAGTAGTTTGCTTAGAACAATCAAGTTGCCAAATCCCAATTCGTGAGCTGGAGCTG
ATTTGTGTCCACTAGAACTTGCTACTTTTCAAATGTCAAATTCTTCTCTACTATGATACAGAGCATGTATTTCATAATATTGTTGA
AAAAGAGAGAGAGAAAAAAAAAAGGAAAAATGCAGAAAATGAATAATTGGCAATGGCATCAGCTCCTTTATGTACATAGTAATAAA
CCTCTCACTAGCAAATAGCAAGCTTAGTAGACTTCCACGTTCCACTGCTCACTCTTCTTCAATTGCTTCTTGTACTCCAACCAATC
GATCCCATCTTTAGCAGCAAGTGAGACCATGATCTCATCGATACCCTTCTCCATACCCTTGAGACCACACATGTAAACAAAAGTGT
TGTCTTTCTTCAGCAACTCCCACAGCTCTTCTGCATACTCTGCGTTGATACCACTGCGCTCGATTGTTGATTTGGCTGTTGCTGTG
GAGAAGAGTGAGCTCGAAGCTATGATTAAAAGGAAGGAGAAGAAGATGGGGTTTCTCATAATTTCTTTTCTAGGGTTTTAGACTCT
CTCTCTCTCTCTTACAGGAAGCTGCTCACCGTACAATGGAGAAGGTTCGGACAAACCGACGATTGGTCTGGAGATTTCAAGTTTGA
TAAAGGAAGAAACTTTCTTTATCAGTGGATTTTTCTTCTTCTTCTTGAGGAGAGAGAGAGAGAGAGTGAAGAAAAGTTAAAACTTT
ATTTGAAATGGAGGAGAGAGAGAGGGGCGAGGGAGAAGCAGACAAATGTGTTGTACAGAGGTGAACACCC
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GenBank top hits (Blast detail) | Score | e value |
NP_201419 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | 1699 | 6e-187 |
AAS76769 At5g66180 [Arabidopsis thaliana] | 1692 | 4e-186 |
XP_002866769 hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp. lyrata] | 1672 | 9e-184 |
NP_001032161 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | 1571 | 4e-172 |
NP_001032160 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | 1380 | 6e-150 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9FKW6 Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic | 330 | 1e-029 |
P10933 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 316 | 6e-028 |
Q8W493 Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic | 309 | 4e-027 |
P41344 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 308 | 5e-027 |
P41346 Ferredoxin--NADP reductase, chloroplastic | 304 | 2e-026 |
TrEMBL top hits (Blast detail) | Score | e value |
Q6NLP8 At5g66180 | 1692 | 3e-186 |
Q2V2U2 Putative uncharacterized protein At5g66180.3 | 1571 | 3e-172 |
Q2V2U3 Putative uncharacterized protein At5g66180.2 | 1380 | 4e-150 |
C6THT0 Putative uncharacterized protein | 1327 | 6e-144 |
B9GZ00 Predicted protein | 1292 | 7e-140 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G66180.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 5021 Blast hits to 4182 proteins in 1157 species: Archae - 270; Bacteria - 3133; Metazoa - 499; Fungi - 156; Plants - 103; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink). | 1700 | 2e-189 |
AT5G66180.3 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 4894 Blast hits to 4168 proteins in 1153 species: Archae - 264; Bacteria - 3020; Metazoa - 496; Fungi - 156; Plants - 99; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink). | 1572 | 1e-174 |
AT5G66180.2 unknown protein | 1380 | 2e-152 |
AT5G66190.1 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp | 331 | 1e-030 |
AT5G66190.2 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp | 331 | 1e-030 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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