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Information for unigene UN18543

FASTA Sequence
Unigene ID: UN18543Length: 2048 SSR 
GGGGTCTCTGCCTGCGGCGGTTTCTCAATGTCGAAGCAGGTGCAGTTGCCGGAGAATTTCCTTAGCTTCTTAGAGGGCAATGGCAT
CGATCCTTCAATCTATAATCAAGGAGATTCACTTCGACGCTATGTAAGGTTGAAACCTGGGTTCGAGGATGCTGTCCAAGAGATTG
AATCTGAAATTAGCTGCAAGCTGGAGCAGCTGGATTGGTTACCCGGATTTTACTCAATTCCTTCACATGTTCATATAGCGAGATCC
AAGGCGTATCAGCAAGGCAAGATGTACGGAATCGACGCAGCTTCAGGTGCTGCTGTTTCAGCTCTTGGTATCTCCCCTGGAGACCA
TGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTGTGTATGATGCTAGACCTACTTGGTGACAAGGGTACTGCAACCGGTGTCG
ATGTTGCAAGGCATCGCCTCTCTGCCTGCAGAACCATGCTTCAAAAATATGGTCTCGGTGATAGGAGTCGCCTCTTCCTTGCTGAT
GGAACTACTTTCTCACTTCCACCTACCCCAAACCTACCTTGTGGTTCATGTGATGAAGAGACGTTCAAGCAGTGGACTTCTCGTAG
ACCTTACAAGGAAAGGAAACAATTAGCCAAGACCAGGAACAACTTTGTTTTGCCGCATCCCGAAATTATTTTCTACGGACAGAATT
CTGGAGTAATAGGGCTACAAAAGAAGGAGCTTTTTAGATCCCTTGACCAAAATGATTATGCAAATTGTGGATATGACAAGGTTCTT
GTAGACGCAGAGTGCACACATGATGGTTCAATCAAGCATATCCAGAAGTTTGAGCAATGGGGCTGGACAACGTTGGAACGCCGTGT
ACTGGATGCTGAGAGAACCGATACAAACTTGACTGCTCTTCAGTTAAATCTACTGAGAAATGGATTCAGATTGTTGAAACAAGGTG
GCATTCTTGTATACAGCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTGCTGAAAGCTCCTCCGCA
GAGCTGCAGGAGATTGAAATGGCCAGGGAATGGCCGTGTAGAAGCGGACGCACTCCAAAAACAGTGCGTTTCGACCCTTCTACCTC
AGCAACCAGCGGTCTCTTTGTTGCGAGAATCAAGAAAATGGCACCCAAAGAAGCAGAGAAGGATGTGCTGTGATGAATGATGACTC
TATTTTAAGTTTTTAACTGTGAAGAATAGAAAGTAGTTTGCTTAGAACAATCAAGTTGCCAAATCCCAATTCGTGAGCTGGAGCTG
ATTTGTGTCCACTAGAACTTGCTACTTTTCAAATGTCAAATTCTTCTCTACTATGATACAGAGCATGTATTTCATAATATTGTTGA
AAAAGAGAGAGAGAAAAAAAAAAGGAAAAATGCAGAAAATGAATAATTGGCAATGGCATCAGCTCCTTTATGTACATAGTAATAAA
CCTCTCACTAGCAAATAGCAAGCTTAGTAGACTTCCACGTTCCACTGCTCACTCTTCTTCAATTGCTTCTTGTACTCCAACCAATC
GATCCCATCTTTAGCAGCAAGTGAGACCATGATCTCATCGATACCCTTCTCCATACCCTTGAGACCACACATGTAAACAAAAGTGT
TGTCTTTCTTCAGCAACTCCCACAGCTCTTCTGCATACTCTGCGTTGATACCACTGCGCTCGATTGTTGATTTGGCTGTTGCTGTG
GAGAAGAGTGAGCTCGAAGCTATGATTAAAAGGAAGGAGAAGAAGATGGGGTTTCTCATAATTTCTTTTCTAGGGTTTTAGACTCT
CTCTCTCTCTCTTACAGGAAGCTGCTCACCGTACAATGGAGAAGGTTCGGACAAACCGACGATTGGTCTGGAGATTTCAAGTTTGA
TAAAGGAAGAAACTTTCTTTATCAGTGGATTTTTCTTCTTCTTCTTGAGGAGAGAGAGAGAGAGAGTGAAGAAAAGTTAAAACTTT
ATTTGAAATGGAGGAGAGAGAGAGGGGCGAGGGAGAAGCAGACAAATGTGTTGTACAGAGGTGAACACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_201419 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]16996e-187
AAS76769 At5g66180 [Arabidopsis thaliana]16924e-186
XP_002866769 hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp. lyrata]16729e-184
NP_001032161 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]15714e-172
NP_001032160 S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]13806e-150

Swiss-Prot top hits (Blast detail)Scoree value
Q9FKW6 Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic3301e-029
P10933 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic3166e-028
Q8W493 Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic3094e-027
P41344 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic3085e-027
P41346 Ferredoxin--NADP reductase, chloroplastic3042e-026

TrEMBL top hits (Blast detail)Scoree value
Q6NLP8 At5g6618016923e-186
Q2V2U2 Putative uncharacterized protein At5g66180.315713e-172
Q2V2U3 Putative uncharacterized protein At5g66180.213804e-150
C6THT0 Putative uncharacterized protein13276e-144
B9GZ00 Predicted protein12927e-140

Arabidopsis top hits (Blast detail)Scoree value
AT5G66180.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 5021 Blast hits to 4182 proteins in 1157 species: Archae - 270; Bacteria - 3133; Metazoa - 499; Fungi - 156; Plants - 103; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).17002e-189
AT5G66180.3 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 4894 Blast hits to 4168 proteins in 1153 species: Archae - 264; Bacteria - 3020; Metazoa - 496; Fungi - 156; Plants - 99; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).15721e-174
AT5G66180.2 unknown protein13802e-152
AT5G66190.1 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp3311e-030
AT5G66190.2 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp3311e-030

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  11%
 
211  11%
 
105  56%
 
191  11%
 
61  11%

Unigene MembersMember information