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Information for unigene UN18560
| FASTA Sequence |
| Unigene ID: UN18560 | Length: 1648 |
SSR | | TTCCTCTCTTCCTCTCCTCGTCGTCTTCACGATTCCACGACGATTCATCTCCGACCACCACCGATTATCGGTTTCACTTCTGATTC
CACAGATCCCCTCGAACTCTCAACTCATCTCCCCTCTCAAATTCTCGATCTTTCCCCTCTAATTCGAAACCCTAATCTCGCCTACC
AATTCCAATTCCGCACAAAGATCTAGTCTTTACCGATGGACGCGACTAGGGTTTGCTCGGAGGTTCCCGGATCTTCGAAATCAACC
TCTCTCACGGAGTCGACCTCTCGCACGGAGACCATCAACGGCTCACACGAGTTCAAGATCAGCGGCTACTCTCTCGCCAAAGGGAT
GGGGATAGGCAAGTACGTGGCTTCGGATACGTTCATGGTCGGTGGGTACTCGTGGGCGATCTACTTCTACCCGGATGGGAAGAGTC
CCGAGGATAACTCTGTCTACGTGTCTCTCTTCATAGCGCTCGCGAGCGAAGGAGCTGATGTTAGGGCTTTGTTTGAGCTGACACTT
GTTGATCAGAGTGGTCATGAGAGGCATAAGGTTCATAGCCATTTCGGTAGGACTCTTGAGAGCGGACCTTATACTCTTAAGTACCG
AGGAAGTATGTGGGGATACAAGCGGTTTTTCAAGAGGACTCTTCTGGAGTCATCAGATTATCTCAAGGACAATTGCCTCTTGGTGC
GGTGCTGTGTGGGCGTGGTGAAGTCACAAACAGAGGGACCGAGGAGTTACAATATCCCTGTGCCGGTTTCTGACTTGGGGCATCAG
TTTGGAAAGCTTTTGGAGAGTGGGAAGGGAGTTGATGTTACATTCCGAGTTGATGGAGAGACGTTTCCTGCTCACACGTTGGTTCT
TGCAGCTCGTTCTCCAGTTTTCAGGGCACAGCTTTTTGGCCCGTTGAAAAACCAAAACACCAAAAGCATAATCATAGAAGACATGG
AAGCTCCCATTTTCAAGATGTTCCTCCATTTTATCTACTGGGACGAGTTGCCTGATATGGAAGACATAATGGGCACAGACTTGACC
CTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGTTATGCTCTGGAGCGGCTTAGAACCATCTGCGAGTCAAAACTCTGTGAAGG
AATCAGCATAAACACAGTAGCGACCACCTTGGCTTTGGCAGAGCAGCATCATTGTTTCCAGCTAAAAGCTGCGTGTCTTAAATTCA
TAGCATTGCCACAAAACCTGAAAGCTGTGATGGAAACGGATGGGTTTGATTATCTGAAGGAAAGCTGCCCATGCTTACTAAGTGAG
CTGCTGGAGTATGTGGCTAGGCTGAGTGAGCACTCTTTAACATCATCGGGGAATAGGAAGGAGTTATATGCTGGTGGTGGTGACGT
GAATGGGAGACGAGTGAAGCAGCGGTTGCACTAAGTAACTCGCTTTCAGGGAGAGAGAGAGAGAGAGACTGATCACGTTGGAGGAG
GCATCTTTGGGTAAACAGAATTGTAGAAGAGTCGAGATTTGTTGTGCATTTGTCATTTGTAAAAGGATTAGTGATTGTTCCGTGTT
GTCTAGCCAAGTAGAGTGACATGTTTTTTTTTGTATTTTTGTGCTTTTTTGATTGTATTGACTAGAGCCGCTTCTCTCAAGGAAAA
GTTTCATGAAACTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884563 ATBPM2 [Arabidopsis lyrata subsp. lyrata] | 1881 | 4e-208 |
| NP_566275 BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] | 1875 | 2e-207 |
| XP_002871853 BTB-POZ and math domain 1 [Arabidopsis lyrata subsp. lyrata] | 1700 | 4e-187 |
| NP_197401 BTB-POZ and math domain-containing protein [Arabidopsis thaliana] | 1690 | 5e-186 |
| XP_002516797 Speckle-type POZ protein, putative [Ricinus communis] | 1566 | 1e-171 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5BL35 Speckle-type POZ protein-like A | 266 | 3e-022 |
| Q7T330 Speckle-type POZ protein | 262 | 9e-022 |
| Q6IQ16 Speckle-type POZ protein-like | 261 | 1e-021 |
| A0JMG1 Speckle-type POZ protein-like B | 258 | 3e-021 |
| Q2M2N2 Speckle-type POZ protein-like | 258 | 3e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M8J9 F28L1.13 protein | 1875 | 1e-207 |
| Q8L765 Putative uncharacterized protein At5g19000 | 1690 | 4e-186 |
| B9RSS8 Speckle-type POZ protein, putative | 1566 | 9e-172 |
| B9SFP2 Speckle-type POZ protein, putative | 1517 | 4e-166 |
| B9HY81 Predicted protein | 1502 | 2e-164 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06190.1 BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding | 1876 | 5e-210 |
| AT5G19000.1 ATBPM1 (BTB-POZ and MATH domain 1); protein binding | 1691 | 1e-188 |
| AT2G39760.1 BPM3; protein binding | 1166 | 1e-127 |
| AT3G06190.2 BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding | 1140 | 1e-124 |
| AT3G03740.1 ATBPM4 (BTB-POZ and MATH domain 4); protein binding | 1093 | 3e-119 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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