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Information for unigene UN18563
| FASTA Sequence |
| Unigene ID: UN18563 | Length: 1633 |
| SNP | GGAGCCGAGCTAAAGAAATTCGTTTCTGGTATAACCGAGTTGACGCCAGATGCTATAAGAGTACTCACCGCTGCAGATAAGCTTGA
GAAGGATCTGGTGCAGATCGCAGTTCAAGACGCAGTTGATAGTGATGATGGCGGTAAATCAGTTATAAGAGAGATGCCTCCTTTTG
AAGCGGAAGTTGTTATAGGAAACCTTGTGAAATCATGGATCAAGACCAGAGTGGACAGACTGAAGGAGTGGATTGATCGGAATCTC
CAGCAAGAGGCATGGAATCCGAAATTGAATAAACTTGGCATTGCTCCTTCTTCCGTGGATGTACTGAGGATGGTAGATGAGACATT
GGAAGCGTTTTTCTTGTTGCCGATTCTCTTGCATACAGTTTTACTTCCCGAGCTGACGTCAGGCCTTGACGAGTGTATGCAGCATT
ATGTAGCAAAGGCCAAATCTTCCTGCGGCTCGAGGAATACATTTCTACCTGCTTTACCTGCCTTGACAAGATGTTCCGTTGGGTCA
AGACTACATGGTGTCTTCAAGAAGAAGGAGAAGCCAATGGCTGCTTCTAACCGGAGAAAATCACAGCTCGGGACGGGTAACGACTC
AGCTGAAATACTCCAGTTCTGTTGCAGAATCAACACTCTGCATTACATCAGGACGGAGCTGGAATCCTCCGGGAGAAAAACACTAA
ACCGTCTCCCGGAATCCGACATAGCTTCCTTTGATGGTAAAGCTAAAATCTTTGAACAGTCGATCGGTTACTGCTCGAAAGGAATA
CAGCAACTCTCTGAAGCAACTGCTTACAAGATCGTCTTCCACGATCTGAGCAACGTTCTCTGGGACGGTCTGTACGTGGGAGAAGT
ATCTTCCTCGAGGGTCGAGTCCTTTCTTCAAGAACTCGAACGTTGCCTTGAGATTATTTCATCATCCGTTCACGATAGAGTCAGAA
CCAGAGTCATTTCAGACATCATGAGAGCTTCTTTCGACGGGTTCTTACTAGTCCTCCTCGCTGGTGGACCATCGCGTAGCTTCACG
GTTCAAGATTCCGATGCGGTAGACGAGGATTTCAAGTTTCTATGCGATCTTTTCTGGTCAAACGGAGACGGGTTGCCTTTGGATTT
GATTGAGAAGGTTTCGACGACTGTCAAGAGTATACTTCCGCTGCTGCGTACTGATACGGACTCTCTTATAGAACGGTTTAAAGCGG
TGTGTCTTGAGAATCACGGTTCAGACAGAGGGAAGCTTCCGTTGCCGCCGACTTCTGGACCGTGGAGTCCGACAGAAGCGAACACG
CTGTTGAGGGTTTTGTGTTACCGTTATGATGAGTCTGCGACGAAGTTTCTGAAGAGAACGTATAACTTGCCGAGGAAGCTAACTTG
AGAATATGACGTGGAAATGGGAGGTACACCGGTCTAGTGTGAGATGTGGTATATTTCTTTGGCTTGATGAGAAACAATTTGGTATT
TGATAAGTTACCTGTACAAGAAAGTAGAAAGAGTTTTTGTGTAACGTTCTTCAGTTGTACTTGTACTATTCCTTTTTTTTTTTTTG
TAACACATTGTACTTGTACTATTCTGCGTGTAGTTTTTTTTTTCTTTTTGTTATGTGTTGTCAACTATATAATAGAGTATTAGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883952 hypothetical protein ARALYDRAFT_899867 [Arabidopsis lyrata subsp. lyrata] | 2218 | 3e-247 |
| NP_179591 uncharacterized protein [Arabidopsis thaliana] | 2205 | 1e-245 |
| NP_001077922 uncharacterized protein [Arabidopsis thaliana] | 2205 | 1e-245 |
| XP_002514245 conserved hypothetical protein [Ricinus communis] | 1604 | 5e-176 |
| XP_002324442 predicted protein [Populus trichocarpa] | 1557 | 1e-170 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8MR32 Uncharacterized protein At2g20010.1 | 2205 | 7e-246 |
| Q9SL80 Putative uncharacterized protein At2g20010 | 2205 | 7e-246 |
| B9RKK1 Putative uncharacterized protein | 1604 | 3e-176 |
| B9ILS6 Predicted protein | 1557 | 1e-170 |
| B9IKI0 Predicted protein | 1548 | 1e-169 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G20010.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25800.1); Has 93 Blast hits to 88 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 2206 | 3e-248 |
| AT2G20010.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25800.1); Has 94 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 2206 | 3e-248 |
| AT2G25800.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20010.2); Has 242 Blast hits to 156 proteins in 35 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 18; Plants - 94; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). | 1465 | 2e-162 |
| AT2G33420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04470.1); Has 112 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 717 | 1e-075 |
| AT1G04470.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33420.1); Has 116 Blast hits to 109 proteins in 23 species: Archae - 0; Bacteria - 1; Metazoa - 4; Fungi - 4; Plants - 95; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | 706 | 2e-074 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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