RadishBase

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Information for unigene UN18596

FASTA Sequence

Unigene ID: UN18596	Length: 963	SSR
GGGAGTTAATAATATCCTTCGCGATTCAATAGATTCTCTCGTCTTACGAGTTACGACATCGTTAAAAGCCAAGCCCTTGTTACCTA TAAATGGAGGAACAGTTCATACTTAGGGTTCCACCCTCTGTTTCTGAGCGAATCGATCGTCTTTTGAGCGACGAGGCTTCTACTTC CGACGAAATCCCTTTAGATTTGTGCTTTTCAGAGGATGGGAGAAGTGGGACGTTTATGATTGGAAACGAAGAGTTCCCAGCTTCTC TGCTGGATCTTCCTGCTGTTGTTGAGTCTTTTAAAACTTATGATGATTCTGCATTAGTCAAAACTGCTGATATTGGGCAGATGATC ATGGTTAGGGAGCCAGGTGATCCCTCGCCTAATACAGTAGAATACAGACATGGTCTAACTCCTCCAATGAAGGATGCTCGAAAGAG AAGATTCCGTCGAGAGCCTGACCTTAATCCGGAGCTTGTTCAGCGTGTTGAGAGAGACTTACTGAACATCTTGAGTGGCGGAACAA TCGGAAACGTAAATGAGCAGCAAGAGGAAACAGTTGCGAACGAGAATACTAGTGATAATAATGCAAACAAGAAAGTGTCTTCTTCT TCACCTGCTGATGCACCTGGTGAAAAGCCTGAAGAAGCTCTTGAGACAGCGACTAATAATAATAATAATAATGTAACCGAAGCTGA GCCGGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGAGGTTATTTATGTAACGGCGAAAGCTATATAGGATATTCCGA AGGGTTTTTAAAGAAACGTATCTAGGGAGTATGTCAAGATGTTGCCGCTATGTTTACCACTTATTATTTATTTGGTTCATTGTCAG CAAGAGAAGAGTGTTCCGGTCCTGGTAATAATAACCTCTATGACTTTGTTGATTCTAGCTTTTGAGCCATAGGCATCATATATAAG AAAGCACACTTACAGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002894499 hypothetical protein ARALYDRAFT_474587 [Arabidopsis lyrata subsp. lyrata]	807	6e-084
NP_175926 TBP-associated factor 7 [Arabidopsis thaliana]	794	2e-082
NP_001031194 TBP-associated factor 7 [Arabidopsis thaliana]	707	2e-072
XP_002285704 PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor [Vitis vinifera]	637	3e-064
XP_002299114 predicted protein [Populus trichocarpa]	608	7e-061

Swiss-Prot top hits (Blast detail)	Score	e value
Q9D3R9 Transcription initiation factor TFIID subunit 7-like	170	2e-011
Q9R1C0 Transcription initiation factor TFIID subunit 7	159	4e-010
Q6R1L1 Transcription initiation factor TFIID subunit 7	155	1e-009
Q2HJG8 Transcription initiation factor TFIID subunit 7	153	2e-009
Q15545 Transcription initiation factor TFIID subunit 7	153	2e-009

TrEMBL top hits (Blast detail)	Score	e value
Q9C8A0 AT1G55300 protein	794	1e-082
Q2V4G7 AT1G55300 protein	707	2e-072
B9GLF9 Predicted protein	608	5e-061
C6T8E6 Putative uncharacterized protein	608	5e-061
C6T015 Putative uncharacterized protein	607	6e-061

Arabidopsis top hits (Blast detail)	Score	e value
AT1G55300.1 TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor	852	1e-091
AT1G55300.2 TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor	707	1e-074

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			25%


12	1			25%


7	2			50%

Unigene Members	Member information