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Information for unigene UN18601
FASTA Sequence |
Unigene ID: UN18601 | Length: 1007 |
SSR | | GGAATTATTCATCGTCGACACCGAACCTTAAAAACGCTCACGAGAAATCTCCGATCGGCTGCCTTCTGGTGAGAGATCCTCTCAAA
CGATTTGATTTTAGAAGGGAAGCAAAAGTTAGGTGAGGATTGGAGAAAGATGTCACAAGGATGGTTTTCGATGAGCAGCGGAGATC
AGCAGCAGCAGCAGAAGGAGCTGCAATCGGGATCGTCTCTGCTCGCGGATTGGAATTCTTACGCAGCCTCCAGAGATGTCGAAGAA
GGCGGCGGAAGCTTCGGTTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTTTCAGGCACCTTCAGTGTGGTTTCAAA
GGGAGTTAGAGATATTCCGGGGAGCCTGTCGTCAGCAACAAGCAGTATGCCTTCAGGGAAATCGCTTATGTACTTCGGTTTACTCC
TCGCAAGCGGTGTATTCTTCATTTTCATTGCCTTCACTATGTTTCTTCCGGTCATGGTGCTTATGCCTCAGAAGTTTGCTATTTGT
TTCACCCTTGGATGTGGTTTTATCATCGGTTCTTTCTTCGCTCTTCGTGGCCCACAAAATCAGCTCGCACACATGACATCCATGGA
GAGACTTCCTTTAACCATAGGTTTCATTGCCACCATGGTTGGCACCATTTACGTGTCAATGGTTCTCCACAGCTACATTCTCTCCG
TCCTCTTCTCTGTCTTACAGGTGCTTGCGTTAGTTTACTACTGTATATCATACTTCCCTGGTGGATCATCAGGCATGAAGTTCCTC
GGTTCTGCTCTTACCTCTTCTGTTCTAAGAGTTTTTGGGAGATGAGCTTCCGTGGCCAATCTGGAAGAAAGGACAGCACTGGTGTA
TACAGAGAGAATGTCAGAGCTTTTTTCGTGTTCTAGTTAACATAGATTTGATGAAAATGTTTGTAAAGACAAAACTGTTCTGAAAA
CTATCTTCAAGTAAGAACTCAAGTGATGCTATCAAGTGCTGATCAGATATATCATTGTGTT
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GenBank top hits (Blast detail) | Score | e value |
XP_002867560 hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata] | 1037 | 1e-110 |
NP_567749 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | 1023 | 6e-109 |
BAD94047 hypothetical protein [Arabidopsis thaliana] | 1017 | 3e-108 |
XP_002864425 hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata] | 966 | 2e-102 |
NP_200413 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | 962 | 7e-102 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P38166 Protein transport protein SFT2 | 218 | 6e-017 |
Q9P6K1 Protein transport protein sft2 | 208 | 8e-016 |
TrEMBL top hits (Blast detail) | Score | e value |
Q2HIG7 At4g26550 | 1023 | 4e-109 |
Q56X48 Putative uncharacterized protein At4g26545 | 1017 | 2e-108 |
Q9FKU4 Genomic DNA, chromosome 5, P1 clone:MDA7 | 962 | 5e-102 |
Q6IDC5 At5g56020 | 957 | 2e-101 |
B9T1Q6 Protein transport protein SFT2, putative | 882 | 9e-093 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G26550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | 1033 | 2e-112 |
AT5G56020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26550.1); Has 436 Blast hits to 436 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). | 963 | 2e-104 |
AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | 137 | 1e-008 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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