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Information for unigene UN18601

FASTA Sequence
Unigene ID: UN18601Length: 1007 SSR 
GGAATTATTCATCGTCGACACCGAACCTTAAAAACGCTCACGAGAAATCTCCGATCGGCTGCCTTCTGGTGAGAGATCCTCTCAAA
CGATTTGATTTTAGAAGGGAAGCAAAAGTTAGGTGAGGATTGGAGAAAGATGTCACAAGGATGGTTTTCGATGAGCAGCGGAGATC
AGCAGCAGCAGCAGAAGGAGCTGCAATCGGGATCGTCTCTGCTCGCGGATTGGAATTCTTACGCAGCCTCCAGAGATGTCGAAGAA
GGCGGCGGAAGCTTCGGTTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTTTCAGGCACCTTCAGTGTGGTTTCAAA
GGGAGTTAGAGATATTCCGGGGAGCCTGTCGTCAGCAACAAGCAGTATGCCTTCAGGGAAATCGCTTATGTACTTCGGTTTACTCC
TCGCAAGCGGTGTATTCTTCATTTTCATTGCCTTCACTATGTTTCTTCCGGTCATGGTGCTTATGCCTCAGAAGTTTGCTATTTGT
TTCACCCTTGGATGTGGTTTTATCATCGGTTCTTTCTTCGCTCTTCGTGGCCCACAAAATCAGCTCGCACACATGACATCCATGGA
GAGACTTCCTTTAACCATAGGTTTCATTGCCACCATGGTTGGCACCATTTACGTGTCAATGGTTCTCCACAGCTACATTCTCTCCG
TCCTCTTCTCTGTCTTACAGGTGCTTGCGTTAGTTTACTACTGTATATCATACTTCCCTGGTGGATCATCAGGCATGAAGTTCCTC
GGTTCTGCTCTTACCTCTTCTGTTCTAAGAGTTTTTGGGAGATGAGCTTCCGTGGCCAATCTGGAAGAAAGGACAGCACTGGTGTA
TACAGAGAGAATGTCAGAGCTTTTTTCGTGTTCTAGTTAACATAGATTTGATGAAAATGTTTGTAAAGACAAAACTGTTCTGAAAA
CTATCTTCAAGTAAGAACTCAAGTGATGCTATCAAGTGCTGATCAGATATATCATTGTGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867560 hypothetical protein ARALYDRAFT_492154 [Arabidopsis lyrata subsp. lyrata]10371e-110
NP_567749 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana]10236e-109
BAD94047 hypothetical protein [Arabidopsis thaliana]10173e-108
XP_002864425 hypothetical protein ARALYDRAFT_495689 [Arabidopsis lyrata subsp. lyrata]9662e-102
NP_200413 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana]9627e-102

Swiss-Prot top hits (Blast detail)Scoree value
P38166 Protein transport protein SFT22186e-017
Q9P6K1 Protein transport protein sft22088e-016

TrEMBL top hits (Blast detail)Scoree value
Q2HIG7 At4g2655010234e-109
Q56X48 Putative uncharacterized protein At4g2654510172e-108
Q9FKU4 Genomic DNA, chromosome 5, P1 clone:MDA79625e-102
Q6IDC5 At5g560209572e-101
B9T1Q6 Protein transport protein SFT2, putative8829e-093

Arabidopsis top hits (Blast detail)Scoree value
AT4G26550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).10332e-112
AT5G56020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26550.1); Has 436 Blast hits to 436 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).9632e-104
AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).1371e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
127  70%
 
102  20%
 
91  10%

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