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Information for unigene UN18643

FASTA Sequence
Unigene ID: UN18643Length: 837  SNP
GGGAGGCAATAAAACAGCACAAGAGAAACCAAATCAAAAGAAGAACAAAAAGAGAGAGTAAATGTCTCCAGATCACTTACCTTCTT
CATCTCAAGTCTTCCAAGAACATTCCATTGAAAGTTTCATCTCCAGAAAATTGCTTCAGCAACTTCCCTTTACTCACAACATACAA
CAGCAACAAGGTCATGTACCTGATAAGAACAACTTGAGCGGCAACGTTCTCTTTCTTCTCTCTGTCCTTGTCTGTGGTATCATCTG
CTCACTCGGGTTACATTTCGTAATCCGTTGCGTGTTCAGACGTCACTCGAGTTTCATGATCTCTGATCCCATCTCAAGCCCGTCCA
CACCAGCAGCAAACAAAGGCATCAAGAAGAAAGCTCTCAAGATGTTCCCTGTAGTGAAATACTCACGTGAGATGAACCTCTCAGGG
CTTGGCGAGGAGTGTGTTATTTGTTTGTCTGATTTCGTAGCTGGAGAACAGATACGGCTGCTTCCTAAGTGCAACCACGGGTTCCA
CGTTCGTTGTATCGACAGGTGGCTTACGCAACATATCACTTGTCCGAAGTGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCT
TAGGCGACTGCGATGAAGATCATCAGGTTCCAGCAAGGGAAAGCATAGATGTCAGAATTGCTCCTCTAGAACCTGAAGCAAGAGTA
AACACTTTTAGATAAAGCAGCTAGAGAATATGCCAAGAAACAGTTAGGTTTCAAGAACTTAATTGGTTCTTCTCTTTTAGATTTGA
ACAAAGTTTATGTTTCTAGCCATTGGATTCAAAATCAAATACAACGAAGGTTTTATTTTTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33918 unnamed protein product [Thellungiella halophila]9402e-099
NP_850610 RING-H2 finger protein ATL77 [Arabidopsis thaliana]8783e-092
XP_002883148 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]8774e-092
XP_002891482 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]7815e-081
NP_175347 E3 ubiquitin-protein ligase ATL76 [Arabidopsis thaliana]7691e-079

Swiss-Prot top hits (Blast detail)Scoree value
Q6NML0 RING-H2 finger protein ATL1J7696e-081
Q94BY6 RING-H2 finger protein ATL1I7652e-080
P0C034 RING-H2 finger protein ATL1K7061e-073
Q6NQG7 RING-H2 finger protein ATL1L4731e-046
Q9FLC6 RING-H2 finger protein ATL5B3313e-030

TrEMBL top hits (Blast detail)Scoree value
Q9LS99 At3g187738782e-092
Q4FE33 At1g492107698e-080
B9GGR9 Predicted protein5134e-050
B9S872 RING-H2 finger protein ATL1L, putative5053e-049
C6T8R0 Putative uncharacterized protein5053e-049

Arabidopsis top hits (Blast detail)Scoree value
AT3G18773.1 zinc finger (C3HC4-type RING finger) family protein8799e-095
AT1G49210.1 zinc finger (C3HC4-type RING finger) family protein7704e-082
AT1G49200.1 zinc finger (C3HC4-type RING finger) family protein7661e-081
AT1G49220.1 zinc finger (C3HC4-type RING finger) family protein7061e-074
AT1G49230.1 zinc finger (C3HC4-type RING finger) family protein4748e-048

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  29%
 
112  29%
 
121  14%
 
102  29%

Unigene MembersMember information