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Information for unigene UN18644

FASTA Sequence
Unigene ID: UN18644Length: 1133 SSR 
GGCTCTCGATCAAGCCGGAGAAAAAAGAAAGCATCAGAGAGAGAGAGAGAGATGTCTTCAAAGGACAAGCAACCGTCGAAGCCGTC
TGGTGGTCGGACCAGTGGTATCCGTACACTTTCCGATCTGAACCGAAGATCAGGACCGGACTCCGACAGTGATTCCGATGGTCCTC
AAGAGTACTACACCGGCGGAGAGAAAAGTGGTATGCTTGTTCAGGATCCTTCGAAAGAACCAAAACACGACGATGTTGATGAGATA
TTCAACCAAGCAAGACAACTAGGAGCGGTGGAAGGACCTCTTGAGCGTCCTCCTAGTTCCAGCAGAAGCTTCACTGGAACCGGGAG
ATTGCTTTCAGGAGAAAGCGTGCCAACCGCTCTTCAACCTCCCGAGCCTGTGATTCACAGTATCGTTTTCTGGTCTAACGGTTTCA
CTGTTGATGATGGACCTTTGAGGAAGTTGGATGATCCAGAGAACGAGTCCTTTCTCGACAGCATTCGAAAGTCTGAATGTCCTAAA
GAGCTTGAGCCTGCTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGATATGCCCCGAACGTGAGAAACCTAC
GGTTGCATTTCAAGGAGTGGGAAGGACACTAGGAGGTGGGGCTAGCTCATCAACCCCTCAAAGCCTAAGCAACCCAACCGATGTAG
CCGCGGCTCCATCCCCGTCACAGAGTCCTGTTGTAGTTGATGAAACTCTTCCATCCACGTCTATCCAGCTTAGACTCTCTGACGGG
ACACGCATGGTGGCTAAGTTCAATAACCATCACACGGTCAACGACATTCGTGCTTTTATTGACTTTTCTCGACCAGGGATCCAATC
AACTACAGCCTTCAGGTCATGGGGTTCCCACCTAAGCCGCTTACTGATCCTTTTCAGACCATTGATGAAGCCGGTCTCGCAAACTC
TGTAGTCATTCAGAAATTCTAGAAACTTTTTGTTTCTTTTGTTGTTCTTAAAGAGAGTATTGTTACACTCCAGGATTATCCAAGAA
ATGTTTTGATTTGTAAGAAAAAGTGCACAATCGGCTTATTATGGCAAGAAGGAAAAAACAATGTCATACTATTTCATAAGTGGAAA
GTTTGGTTACAAAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867786 plant UBX domain-containing protein 3 [Arabidopsis lyrata subsp. lyrata]12047e-130
NP_193946 plant UBX domain-containing protein 3 [Arabidopsis thaliana]11804e-127
CAB52871 putative protein [Arabidopsis thaliana]11788e-127
NP_567262 UBX domain containing protein 4 [Arabidopsis thaliana]10532e-112
XP_002872684 plant UBX domain-containing protein 4 [Arabidopsis lyrata subsp. lyrata]10174e-108

Swiss-Prot top hits (Blast detail)Scoree value
Q7Y175 UBA and UBX domain-containing protein At4g154107366e-077
P0C8Q0 UBX domain-containing protein 13674e-034
Q54BQ5 NSFL1 cofactor p47 homolog3631e-033
P0C627 UBX domain-containing protein 2B2536e-021
Q14CS0 UBX domain-containing protein 2B2511e-020

TrEMBL top hits (Blast detail)Scoree value
Q9SUG6 At4g2215011785e-127
Q8RWU7 CDC48-interacting UBX-domain protein10532e-112
A5BGG6 Putative uncharacterized protein9796e-104
B9RXF0 NSFL1 cofactor p47, putative9724e-103
B9HZB4 Predicted protein9643e-102

Arabidopsis top hits (Blast detail)Scoree value
AT4G22150.1 PUX3; protein binding11802e-129
AT4G04210.1 PUX4; protein binding10771e-117
AT4G15410.1 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding7365e-078
AT3G21660.1 UBX domain-containing protein1748e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  29%
 
124  57%
 
61  14%

Unigene MembersMember information