Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN18663

FASTA Sequence
Unigene ID: UN18663Length: 1223 SSR 
GGGTTCCCTTTTCACTTTCTAAAACTACGAACCGGAATCTCTTCCTAATCAGAGACCTAGCGAAGACTCTCTCTCTCTCTCTCTCT
CTCTCACCGCTTCGATCAGGAGAGATCTACAGATGGAGGATACCTTGACTTGGGAGATAGACAACTTCTCCGAGAGGAATGATGGG
ATAAGAACTGCTGACTTCTCAAGCGGCGGCTGTGAATGGCTTGTTTGTGTGTATCCCAAGGGACAGTCTGGCTCTGATCACTTGTC
TCTGTTCCTGCACGTTGCGAATTGTGATTCATTGATGCTTGGATGGAAAAGGAGAGCTAGTTATAGCTTTGTTTTGTTGAATCTAT
CCGGAAAAGAGCTATTCAGAACACTTGAGGAAAAAACATGCATAGTGTTCTGCAATGAACACAAATCCTGGGGTTACACTGAGGTG
CTGCCTCTTTCCACCAAGCTCCAAGAAAAAGGGTTTCTGGAGAAGGACACACTAATCATGAAAATCTACATCAAAGTCTTTGAAGT
TGTTCATCAAGGAAAGTCAACTGAGAATGAGATGTTAGATTTCTGTGGTTTTCAGATCCCTATTCCTCAATATACACTATTGAAAG
AGACTGTCCTAAGAAAGCCAGACTTTGAAATATATTTCGAAACAGAGAAGCAAGTGCTCAAAACAAAGTACAGGACTGTCCTTCGC
ATCTTAAAAACACTGAGCAAGCCTCCCCAGAGCTTGTCTTTGGCTGAACTAGGCAAAGCTCAAAGCGAGCTGAATGTGCTGGAGGA
AGCAACAGGCTTCAAGCTCGAATGGTTCAATTCTAAAATTGAGCAACTTTCCGTGGAGTGCAAGAAAGCAACACTTTCTGATGGAT
CTAGGGTCGGAGAACTCGATGATAGGGTCAGAAATGTGGAATTGACTCTGTGGGATCTCAAAGCTGAACTGGACAAGGATAAGATT
AAATCTGCTGCTGCTTCTGCCGCCGCAGCCGCTGCTGGCGCCGCTGCAGCCGCCGCTGCTGCTAAAGTTTCTTCGTTTCAATTTCT
AGATATTATCATAAAAAGGTTCTTTCTCTCTTGCTTCTCATTCTCAAAATAATAGCTCATCTATGTTTTAATCCTCGGACCTTTGT
GGGTTTTCCATCCAAAAACATAATGTGTTGTGATCCCATCAACTTTCAAGGACGATTCTTTGTTTCCGTTCGTATCAACTATCAAG
CAAGTTCGAGTTCTTATTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881850 predicted protein [Arabidopsis lyrata subsp. lyrata]6213e-062
XP_002892523 hypothetical protein ARALYDRAFT_334257 [Arabidopsis lyrata subsp. lyrata]6179e-062
XP_002881848 hypothetical protein ARALYDRAFT_346045 [Arabidopsis lyrata subsp. lyrata]5757e-057
XP_002881847 hypothetical protein ARALYDRAFT_346044 [Arabidopsis lyrata subsp. lyrata]5471e-053
XP_002886390 hypothetical protein ARALYDRAFT_893070 [Arabidopsis lyrata subsp. lyrata]5372e-052

Swiss-Prot top hits (Blast detail)Scoree value
Q9FPT1 Ubiquitin carboxyl-terminal hydrolase 121882e-013
Q84WU2 Ubiquitin carboxyl-terminal hydrolase 131722e-011

TrEMBL top hits (Blast detail)Scoree value
Q9SLB4 Putative uncharacterized protein At2g424605111e-049
Q8GXS4 Putative uncharacterized protein At2g424605083e-049
Q9SLB2 Putative uncharacterized protein At2g424803462e-030
D5K237 Restricted tev movement 33076e-026
Q9SLB3 Putative uncharacterized protein At2g424702897e-024

Arabidopsis top hits (Blast detail)Scoree value
AT2G42460.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein5117e-052
AT3G58250.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein3844e-037
AT2G42480.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein3461e-032
AT3G58350.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein3021e-027
AT2G42470.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein2894e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  30%
 
66  60%
 
191  10%

Unigene MembersMember information