RadishBase

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Information for unigene UN18681

FASTA Sequence

Unigene ID: UN18681	Length: 1185	SSR	SNP
GGAAACCCGCGTTAATTACGGTTTTGTCCCTACGCGCAGCTCAAAGACCTCCTCTCTCTCTCTGTTCTGTCTTTCGTCTGGTCGGA TCAGTCGAAAAAAGCTTGAAGAATTTGATACTTTTGATTTCTAAGTCCATGGAATCTGCTAAAGAGCGTGATACTTTCGTCTACCT CGCAAAGCTATCTGAACAAGCTGAGCGCTATGAAGAGATGGTGGAGTCGATGAAGAACCTCGCGAAGTTGAACGTTGATCTGACGT TGGAAGAGAGGAACTTGCTCTCTGTTGGATACAAGAACGTGATCGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATCGAG CAGAAAGAAGCAGTGAAAGGGAACGATGTTAATGTAAAGAGGATCAAAGATTATATGGAGAAGGTTGAGTTAGAGCTCACAAGTAT ATGCATTGACATAATGTCTGTGTTAGATGAGCATCTGATCCCATCTGCTTCCGAGGGTGAATCAACTGTCTTCTTCAACAAGATGA AAGGTGATTATTACCGCTATCTTGCTGAGTTTAAATCAGGAGATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAG ATTGCTACTACTTCTGCTGAGGCTAAACTTCCTCCTACACATCCAATCAGATTGGGATTGGCTTTGAATTTCTCTGTCTTCTACTA TGAGATCATGAACTCACCTGAAAGGGCATGTGAGCTTGCTAAGCAGGCGTTTGATGAAGCAATCTCAGAACTTGACAGTCTGAATG AGGAATCTTACAAAGATAGCACTTTGATTTTGCAACTCCTTAGGGACAATTTGACCTTGTGGACTTCTGACATCCCTGAAGAAGGA GAGATGATGCACATAAGACGAATGGTTCTGCTAAACACGGTGCAGGTGAAGACGACGCAGAGTGATCTGATGATATGTGTGCACCC GCAGCAGCAGCAGTAATGGACAAACATGTTTCAAGAACAACTGAATGTGCGGTGAATAATAGCAAAAAACCTATAGTTCTTATGTT TCCTGTATTTTTCTCTCTGGTTTGAGTGTATGTTTGTCTCTCAAGACACTCTTTTCTTTTTTGTGATTTGTATTCAGTACCCTCCT CTTCACCAATTGCTCTTCTCTCTCACTATGTATTCCTATGGATCCACTCTTATATCTCTGTTCAGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACN73535 1433-2 [Brassica napus]	1196	7e-129
ACN73534 1433-2 [Brassica napus]	1188	6e-128
NP_001031532 14-3-3-like protein GF14 mu [Arabidopsis thaliana]	1160	1e-124
XP_002881862 hypothetical protein ARALYDRAFT_483355 [Arabidopsis lyrata subsp. lyrata]	1157	2e-124
NP_565977 14-3-3-like protein GF14 mu [Arabidopsis thaliana]	1154	5e-124

Swiss-Prot top hits (Blast detail)	Score	e value
Q96299 14-3-3-like protein GF14 mu	1154	2e-125
P42654 14-3-3-like protein B	1047	5e-113
Q96453 14-3-3-like protein D	1042	2e-112
Q96452 14-3-3-like protein C	1021	6e-110
P93214 14-3-3 protein 9	1010	1e-108

TrEMBL top hits (Blast detail)	Score	e value
C0KJK7 1433-2	1196	4e-129
C0KJK6 1433-2	1188	4e-128
Q2V408 Putative uncharacterized protein At2g42590.3	1154	3e-124
O49152 14-3-3 protein homolog	1047	9e-112
B9SBK7 14-3-3 protein, putative	1040	6e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT2G42590.2 GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding	1160	4e-127
AT2G42590.1 GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding	1154	2e-126
AT2G42590.3 GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding	1154	2e-126
AT1G26480.1 GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding	966	1e-104
AT1G22300.1 GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding	937	3e-101

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			10%


8	4			40%


11	2			20%


6	3			30%

Unigene Members	Member information