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Information for unigene UN18722
| FASTA Sequence |
| Unigene ID: UN18722 | Length: 1223 |
SSR | | AAGCAGCAGACAGAACTTTATATAGATAATAATAAAAGTAAATTAGATAAGACAGACAGACACACACACAAACAAACAAGATATAA
AAAGTAAAACGATACTGGCACCAGGGTCTTGAGTTTTATTAATGATAATACATTAGCTGCTGTGCTGCAGCTACATTCTGAAAGCC
ACCGTCATACATGGCTGCAGTGGCTCCAGCTCCATTGATTCCATGAGCTGCCTGCCTTAGCGGGTGTTGGCCCTGTGGGTGCATTA
AAGCCATCTTGCTCAGTGCCAATTGTCTCTCATACGCTAAGAGATCAGCTGCGGAGAGACCAGGCACTGGTGCTGGGGCAGGTGGA
GGAAGTGGGTTTGATGCTGTTCCTGGTGGAGTTGGTTTGCTGCCCCATGAACACTTAATCTGTCTGTTAAAGAGGTAAGGCTGAGA
GTTGCCCATCTGAATAGCAAGAGCAGCCTCTGGGTGGGTGTTATATCTCACAAAACCAAAGCTTTGTCTCGTTTATAGCAGTTTGA
GCATCTGTTGATTGCGGAAGGAAACAAACCCAAAGCTCTTGAGCGCCCAGTTTTTTGACCCCACATAACTCTTGCATCCGAACAAG
TGGAAAAAACAGAAAAGATTTGATATAATGCAGCGTCAGTAACCTCTGGACTGAGGTCTCCAACAAAAATGTTAAAGTGACTGGAT
GTATCTTCCCTCTGGCCAGTGGCGTAAGTCCAGTTGACTTTGATAGGCTGTCCAAACAGGTGTCTTCCGTTGAGAGACAGTATAGC
TAGAGCAGCAGATCTTCGGTCAAAGTAGTGAACAAATCCATATGATGACTTATCCTTTCTGATGAGTTTACTGCTTTCAACAGGGC
CGGTGCTTGTAAAAATCTCTTGAAGAAGAGGCTCGGTGACCTGTATATGGATGTTTCCAACATACACGCTACGGCAAGTGCTGGGA
TCAAAACCAGGGGGAAGGTTTCCACTTGGAACAGGCTCTAACTGATGAGGGGCCAAGACACCAGGATGGTAAAGAGAGTGTTGTTG
CATCAAAGCTTGCTGCTGCATCATAGCTTGTTGTTGTTGTTGTTGCCTAAACCTCGGATTCTGCATCTTTTTTCTTTCTTTCCACT
GCGAAAAAAGAGAAAGATTTTTGTTTGTTTCCTTGAGAAAAGTTTTGATTTTGTTTCCACCACAGCTAGGGTTCAGGTACTAATTG
CTAACGAGGTGAAGAAAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188026 RNA recognition motif-containing protein [Arabidopsis thaliana] | 907 | 2e-095 |
| AAM65229 oligouridylate binding protein, putative [Arabidopsis thaliana] | 907 | 2e-095 |
| XP_002882868 hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp. lyrata] | 902 | 8e-095 |
| XP_002892947 hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp. lyrata] | 830 | 2e-086 |
| NP_564018 oligouridylate binding protein 1B [Arabidopsis thaliana] | 829 | 2e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q01085 Nucleolysin TIAR | 298 | 4e-026 |
| P70318 Nucleolysin TIAR | 227 | 7e-018 |
| P32588 Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | 222 | 3e-017 |
| P31483 Nucleolysin TIA-1 isoform p40 | 168 | 5e-011 |
| P52912 Nucleolysin TIA-1 | 168 | 5e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAP3 Oligouridylate binding protein, putative | 907 | 2e-095 |
| Q9LJH8 AT3g14100/MAG2_5 | 907 | 2e-095 |
| B3H4Q3 Uncharacterized protein At1g17370.2 | 829 | 2e-086 |
| Q9LQI9 At1g17370 | 829 | 2e-086 |
| B9N7F5 Predicted protein | 808 | 5e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G14100.1 oligouridylate-binding protein, putative | 907 | 8e-098 |
| AT1G17370.1 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 829 | 9e-089 |
| AT1G17370.2 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 829 | 9e-089 |
| AT1G54080.1 oligouridylate-binding protein, putative | 783 | 2e-083 |
| AT1G54080.2 oligouridylate-binding protein, putative | 768 | 1e-081 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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