Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN18742

FASTA Sequence
Unigene ID: UN18742Length: 1169 SSR 
GTGGCGTCGGTTATCAGTTTTCATCGCTCTCTCTCTCTCTCTCTCTTTACGCTGAGCCCCGATCGGAAGGTTGATTTTGGGGGGGG
AATTGCTTCTTCTCTCTCCGTCCAGCTCAATTCTCGATCAAAAAGACAACTTAACTTGGAGATATGAAGCAGACTGTTTACCATAC
GTTTTGAGGAACGAGAGACTTATTTAGATAGAAAGTTTCAAATCTTTGTTCTGAGGTTAAGAAATCATAGAGGAGGAGGAGGAGGA
GGAGGAGAAGATGGGATGTGTTTCATCTTGCTTTCGAGTCCAAGACATTGATGAGTACATGAATCCAAATAGCTCTGTCTATAGGA
ACTGTCCCTGCATAAGATGCCTTGCTCGTAACTTCCTTAACCTGTATGTATCCATGTTCGGAAGAGGGGAAACCCGCGCTCTACCA
TCTTCCGTTCAAGCTACTACTCCATCGATTACTTCCTCTTCTTCACACGATAACTTTCTGTCTGAAGCCTTCCGCTCTACTCCAAG
GCCTCTGCCTTACGATGCTGATCCTAGGCACTTTCGTTCGCTCGTCTCAAGACGGGAGAAGGGTTCTAGTCACTCCCACGAGGAAG
CTGAGCCTCTAAGGAGTGATAGCGATGCGGATTCTGAATCTTTCGGATGCAAATGGGCAAATAACAAATCGGTTGTCTCTGACAAA
GATCCCAAAGAAGAGTACTCTAGTAAATCCAGTCTTAGGATTATGAAATCAAAGTCAGCGTCTGGAAACATATGGGATTTTCCTTT
GTCTGAAGATGAAGATGCATGTCCAACTTGTCTTGAAGAATATACATCAGAGAACCCAAAGATTGTAACAAAATGTTCTCACCATT
TCCACCTTGGTTGCATTTATGAATGGATGGAGAGAAGTGAGAACTGTCCTGTCTGCGGAAAGGTGATGGAATTCAATGAAACACCA
TGAACATCAATCATCGATCATCTATCTGTGTGTCATGTATCTTAACTGAAACCAGGGAAGATGGCAAGGCAATTGCAGAGGGGATG
TTTCTGTAAATTTGGCTTGTTGGTTTTTTGTGAATATTGTCATTTTACAATGTTAAAATATATGAAGCAGAAAGGGTGAAAATGTA
CCTCTGCAACATTTTAAGCTTTTTATGATATGGCCAAAAAAATGCAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882219 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]10497e-112
NP_566169 E3 ubiquitin-protein ligase [Arabidopsis thaliana]10471e-111
ABD96851 hypothetical protein [Cleome spinosa]9082e-095
ABD96894 hypothetical protein [Cleome spinosa]8803e-092
NP_197083 RING/U-box domain-containing protein [Arabidopsis thaliana]8615e-090

Swiss-Prot top hits (Blast detail)Scoree value
Q8LE94 E3 ubiquitin-protein ligase At3g0229010475e-113
Q9Y4L5 E3 ubiquitin-protein ligase RNF1151246e-006
Q9D0C1 E3 ubiquitin-protein ligase RNF1151246e-006

TrEMBL top hits (Blast detail)Scoree value
Q1KUY5 Putative uncharacterized protein9081e-095
Q1KUU2 Putative uncharacterized protein8802e-092
Q9LFU7 At5g157908613e-090
Q1KUQ0 Putative uncharacterized protein7914e-082
C6TMU9 Putative uncharacterized protein7233e-074

Arabidopsis top hits (Blast detail)Scoree value
AT3G02290.1 zinc finger (C3HC4-type RING finger) family protein10484e-114
AT5G15790.1 zinc finger (C3HC4-type RING finger) family protein8621e-092
AT5G15790.2 zinc finger (C3HC4-type RING finger) family protein8621e-092
AT3G02290.2 zinc finger (C3HC4-type RING finger) family protein7903e-084
AT5G38895.1 zinc finger (C3HC4-type RING finger) family protein6093e-063

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  100%

Unigene MembersMember information