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Information for unigene UN18790
| FASTA Sequence |
| Unigene ID: UN18790 | Length: 1675 |
SSR | | GGGAAGAAGATATTATGGACGTGGATCAGGCGGGTCCCAGCAGCCGCAAACGCAAACGTGGTAACCGGGGAAGAAGAGGCGGCAAG
ATGATGGAACTATTCGAAGGTTTGGTGAGACAAGTGATGCAGAAGCAAGCTGCTATGCAAAGAAGCTTTCTCGAAGCGCTCGAGAA
GAGAGAGCAAGAGCGTCTCCATCGAGAAGAAGCTTGGAAACGCCAAGAGATGTCTCGTTTAGCTCGGGAACACGAGATCATGTCTC
AAGAACGAGCCGCTTCTGCTTCTCGCGACGCCGCCATCATCTCATTGATTCAGAAAATCACTGGTCACACCATCCAGTTACCTCCT
TCTTTATCATCACAACCGTCTCCTCCTCCTCCGCCGCCACCCGCAGCTAAACGCCCTTCATCACAACCTCAACTGCAACCAATAAT
GGCGATTCCGCAGCAACAGGTCCTTCCTCCACCCCCTCCTCCTCCTCCTCATCATCAACTAGACCAACAACAAGAACACCAACCAC
AACAAGAGATGATCATGAGCACGGATCAATCCTCGTCACTGTCGTCATCGCGATGGCCAAAGGCGGAGATTCTTGCGCTTATAAAC
CTGAGAAGCGGAATGGAACCGAGGTACCAAGACAATGTCCCTAAAGGACTTTTATGGGAAGAGATCTCATCTTCCATGAAGAGAAT
GGGATACAACAGAAACGCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAAG
AACGTCCTCAAGATGCTAAGACCTGTCCTTATTTTCACCGCCTCGATCTTCTTTACCGCAACAAAGTACTTGGAACTGGTGGCAGT
TCTAGCGCTTCCGGTCTACCTCAAGATCAAATATCAACAGTACAAAAGCAGAGTCCGGTCTCTGCAGTGAAGCCCCCACAAGGAGC
TGTTGGGTCAGCTTCAAGTGAGGAAGAAGATGCTAGAGAGGAAAGTCCACAAGGAACAGAGAAGCCAGAAGACCTTGTGATGAAAG
AGCTGATGCAACGCCAACAACAACAACAACAACAAGATTCAATGATAAGTGAGTACGAAAAAATTGAGGAGTCTCACAATTATAAT
AACATGGAAGAAGAGGAAGAGGAAGAGGAGATGGATGAAGAACTAGACGAGGATGAGAAATCTGCGGCTTATGAGGTTGCGTTTCA
GAGCCCTGCAAACAGAGGAGGCAATGGCCATACCGAGCCACCTTTCTTGACAATGGTTCAGTAAATCTGAATCACTGTTTCTGAAT
TGCCCTCGTCCCAAGAAAATGTACTTATGTGTGCATAGTTTCTAAACAACACCCAAAAAAACAAAAAAAAACTCAAAACACCTTCT
GACACCAGAAACTGAAAATCAAGGTCTCACCAATCTTGATTTCCAGTGAATACAATTCTTTCTTCACATTCTTTCCCTTTGTTCCT
TTTCTTTCTCACCGTCTCTTGGTTGTTTCTCGGTTCTTTGTTTTCTTCTTCAACACACACACACACCCCCACCCACATGAACAAAA
ACTCTAGCTAAAGGTCTTTTAGTTTATTTGGAGTTGTAATTCATCAGCAAGTCTCACTCTTTTTTTTTTCTTGTTTAAGCATTGGT
TGATTGGTTAATTGGGGAATAAAGAGTCTTTTTTTCAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF97353 Putative GTL1 [Arabidopsis thaliana] | 1778 | 3e-196 |
| NP_174594 protein GT-2-like 1 [Arabidopsis thaliana] | 1778 | 3e-196 |
| XP_002893757 hypothetical protein ARALYDRAFT_473497 [Arabidopsis lyrata subsp. lyrata] | 1723 | 8e-190 |
| CAA05995 GTL1 [Arabidopsis thaliana] | 877 | 1e-091 |
| AAG51283 trihelix DNA-binding protein (GTL1) [Arabidopsis thaliana] | 877 | 1e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42858 Huntingtin | 162 | 3e-010 |
| Q5TKR9 Histone acetyltransferase MYST3 | 142 | 7e-008 |
| Q7G6K7 Formin-like protein 3 | 136 | 4e-007 |
| Q54HN4 Putative mediator of RNA polymerase II transcription subunit 21 | 136 | 4e-007 |
| Q92794 Histone acetyltransferase MYST3 | 128 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LP25 Putative GTL1 | 1778 | 2e-196 |
| O48590 GTL1 protein | 877 | 7e-092 |
| Q9C882 Trihelix DNA-binding protein (GTL1) | 877 | 7e-092 |
| Q8L6Y5 At1g33240 | 773 | 8e-080 |
| Q8W240 GT-2 factor (Fragment) | 699 | 3e-071 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G33240.1 AT-GTL1 (GT2-LIKE 1); DNA binding / transcription factor | 1779 | 1e-198 |
| AT1G76880.1 trihelix DNA-binding protein, putative | 697 | 3e-073 |
| AT1G76890.2 GT2; transcription factor | 397 | 2e-038 |
| AT5G47660.1 DNA-binding protein-related | 263 | 6e-023 |
| AT5G28300.1 trihelix DNA-binding protein, putative | 252 | 1e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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