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Information for unigene UN18810

FASTA Sequence
Unigene ID: UN18810Length: 815 SSRSNP
CAATGCAACATCAACATTATATTGAGTTAGTGTAGGAGACACGAGTTCATATTCATACGCACAAAGATATAAGTTCACATCTGCTC
TTGTTATTCATGAAAATAGTAGGAATTTTCTCTGTTTTTTTTTTGGTCTTAAATAAAATGCTTTTGATCCACAAAGGAGCCACACA
CACACACAAACTAGCCAGGTGTGGAGGTATATGACCTCCTTATTACATCACTATCTTCCTCGATAAAGTGACAGCTTAGCCCTGAA
GACCAATAATACCGCAAGCAACACGGCCGCCTGCATTTCCAGTAGCCAAGCTGAGTTCATGGCCTCCCTTTCCGAGGTCATCAGGG
TCTGCGTGGACAACAACAGCCCTTCCGACAATAGAGTTTGGTCCACTAAGAGGAATCTGGCAGTCAGTGATTGTGAAGGTGGCAGT
TCCATCATCTCCAACAGTGATGTTTCCTAGATCACCAGCATGTCGATTAGCATCCTCCGGGGCACCGTGTTGTTTACCCTCAGGGT
TGAAATGTGGACCGGTAGACATGCAACCGTTAGTGGTGTCACCAAGAGCATGGACATGGAAACCATGTAGACCAGGTTTAAGTCCA
GAAACTGTTCCAGTCACAGTTGTCACACCGTCTCCTTCCTGAGTGAAGAAGATAGTCCCCTTAACACCCTCGCTGCTGTTTAAAAC
TGCAACTCCCTTGGCCATAGTTTGTTATCCTTTGTGATCTCAGGGTACCCCTTTGGGAAAGAAGATTTTTAGCTATGAAAATGCCC
GAATCTTCTTCTCTCGATGAGATTTGTGTGTGTGTGTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172360 Superoxide dismutase [Cu-Zn] [Arabidopsis thaliana]7904e-082
XP_002889716 hypothetical protein ARALYDRAFT_888118 [Arabidopsis lyrata subsp. lyrata]7904e-082
ABN50366 copper zinc superoxide dismutase [Arabidopsis thaliana]7861e-081
AAN60796 superoxide dismutase [Brassica juncea]7752e-080
ABQ59346 Cu-Zn superoxide dismutase [Eutrema halophilum]7752e-080

Swiss-Prot top hits (Blast detail)Scoree value
P24704 Superoxide dismutase [Cu-Zn]7902e-083
Q42611 Superoxide dismutase [Cu-Zn] 17661e-080
Q42612 Superoxide dismutase [Cu-Zn] 27615e-080
P09678 Superoxide dismutase [Cu-Zn]7615e-080
P93258 Superoxide dismutase [Cu-Zn] 17095e-074

TrEMBL top hits (Blast detail)Scoree value
A3FMJ0 Superoxide dismutase [Cu-Zn]7869e-082
A9Q115 Superoxide dismutase [Cu-Zn]7752e-080
Q8H6F2 Superoxide dismutase [Cu-Zn]7752e-080
O22374 Superoxide dismutase [Cu-Zn]7706e-080
O81352 Superoxide dismutase [Cu-Zn]7617e-079

Arabidopsis top hits (Blast detail)Scoree value
AT1G08830.1 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase7911e-084
AT1G08830.2 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase7911e-084
AT2G28190.1 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase5267e-054
AT5G18100.1 CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase5151e-052
AT5G18100.2 CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase4192e-041

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
125  45%
 
102  18%
 
73  27%
 
191  9%

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