Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN18825

FASTA Sequence
Unigene ID: UN18825Length: 968 SSR 
GGATGGAAAGTAACAAATTAAAGGTTCAAAAAAAAAGGACAAGACTCGTTTTCTAGGGTTTGGTTTTTGATCATGTTTCCCGATTC
AAACGATGTTGCAGAGGTCAAAGAAGATGTTTTGACGGCGACGAAAATTGCTGACTCGTCGTGCCTCGGAAAGCGCAAGGCGGAGG
AGGATTGTGAGTCGAGTATGGAGGAGACGGACGATGGAGGAAGCGACTCGAGTATGGTGGAGAGCGAAGAAGAAGAAGAAGAAGAA
GAAAGCGAACCTGAAACCGAACCGGTGTGGGGTTACGACAGCTTCGAAGACAGAGACTACTTCTCCTTCTCCGAAGGCGAACTTGC
TGAGGATTTCTCCGACCAAGAGTATTTAAAGCCTTACCTTGACTACAGGCGCCAGATTCACTTGACCAGGGGTTTTGAGGTGGATC
CGGATAGCATTCCTGATGACATGATTACTGGTTACTTCCCTATTGACTTGAATGATACACGCTTTGGCTGGCCCAAATCACCAGAT
GGAACCGCTCGTTGCTACATGGAACGTATGGTCCAAATGTGTCTCGATAAGTACAACAAAACACAGGGATTGGATGTGAAAATGGA
TCATGTTGTGAGGGCGATCGCAATGAAATCTGCCGGAATCAAGTGCTATATCACCTTTATGGCACAAGAGATTCCAACTGGGCCTT
TGGTAGAGTACCAAGCTAAAACCGAGTGGAAGATTCGTCAAGTTCACACTTATCCTATCTTTTGCAGACCCTCTCCTCCACCAGTC
GATCTTAAGGACAAGGCACGCAAAAGCACCAGGGTCAGGCCAAGAAAATAATTAAATTAACTTAAATTTCGCTTTGGGATTCTTAC
ATATATATATATATATATCAACTCTAGAAACAAAAAGTTATGCTATTATGTAAATATCGTTGACTTCTTATTGTTTGGATTATCAG
TATGATTAAATCGATTTTGTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889471 hypothetical protein ARALYDRAFT_470343 [Arabidopsis lyrata subsp. lyrata]3712e-033
XP_002889468 predicted protein [Arabidopsis lyrata subsp. lyrata]3613e-032
XP_002889469 hypothetical protein ARALYDRAFT_333689 [Arabidopsis lyrata subsp. lyrata]3452e-030
NP_171867 cystatin/monellin-related protein [Arabidopsis thaliana]3292e-028
XP_002889470 predicted protein [Arabidopsis lyrata subsp. lyrata]3282e-028

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q58G57 Putative uncharacterized protein3291e-028
Q5Q0J0 Putative uncharacterized protein3244e-028
Q9LR56 F21B7.313192e-027
Q9LFJ1 Putative uncharacterized protein F2K13_2701901e-012
Q9LFJ2 Putative uncharacterized protein F2K13_2601812e-011

Arabidopsis top hits (Blast detail)Scoree value
AT1G03710.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).3297e-031
AT1G03710.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).3297e-031
AT5G17120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17150.1); Has 47 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).1909e-015
AT5G17110.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17100.1); Has 34 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1819e-014
AT4G03570.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03590.1); Has 38 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1755e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
98  67%
 
72  17%
 
122  17%

Unigene MembersMember information