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Information for unigene UN18837
| FASTA Sequence |
| Unigene ID: UN18837 | Length: 836 |
SSR | | TGGGGACACACATACTCAATTCAGACAAACTCCATAGCTAATCTAGAGAGAGAGAGAAAACAAGATGTCGAAAGAAGTGAACGAAG
AGGGACAAGCAACACACAGCCATGGAAAAGACTACGTGGATCCTCCACCAGCTCCCCTTCTCGACATGGGAGAGCTCAAGTCTTGG
TCTTTCTACAGAGCTCTCATCGCCGAGTTCATCGCCACACTCCTCTTCCTCTACGTCACCATAGCAACCGTCATCGGCCACAAGAA
ACAAACCGGTCCTTGTGACGGCGTTGGTTTACTCGGTATCGCTTGGGCCTTCGGTGGTATGATCTTCGTCCTCGTCTACTGCACCG
CCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGACTTTTGGTCTGTTCTTGGCACGTAAGGTGTCTTTGGTGAGAGCTGTTGGT
TACATGATAGCTCAGTGTCTTGGAGCCATTTGTGGTGTGGGTTTCGTTAAAGCTTTCATGAAGACTCCTTACAACACTCTCGGTGG
GGGAGCTAACACTGTCGCCCCTGGTTACAGTACTGGAACTGCTCTCGGTGCTGAGATCATTGGAACTTTCGTCCTCGTTTACACCG
TCTTCTCTGCTACCGACCCTAAGAGAAGCGCTCGTGACTCTCACATCCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTC
ATGGTGCATTTGGCAACCATCCCCATCACTGGAACTGGAATAACCCAGCGAGAAGCTTTGGTGCTGCTGTATCTACACACGAGAAG
CATGGGATGACATTGGATCTTCTGGGTGGGCATCGTGGAGCATAGCAGCAGCAGCTACATCA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAG30607 aquaporin [Brassica oleracea] | 1147 | 2e-123 |
| NP_195236 aquaporin PIP2-7 [Arabidopsis thaliana] | 1122 | 1e-120 |
| AAB65787 plasma membrane intrinsic protein [Arabidopsis thaliana] | 1107 | 8e-119 |
| AAB36949 plasma membrane intrinsic protein PIP3 [Arabidopsis thaliana] | 1107 | 8e-119 |
| XP_002869108 hypothetical protein ARALYDRAFT_491143 [Arabidopsis lyrata subsp. lyrata] | 1106 | 1e-118 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P93004 Aquaporin PIP2-7 | 1122 | 6e-122 |
| Q9ZVX8 Probable aquaporin PIP2-8 | 1061 | 8e-115 |
| P42767 Aquaporin PIP-type | 1021 | 3e-110 |
| Q7XLR1 Probable aquaporin PIP2-6 | 956 | 1e-102 |
| P43286 Aquaporin PIP2-1 | 917 | 4e-098 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FUC0 Aquaporin | 1147 | 1e-123 |
| C0SVL5 Putative uncharacterized protein At4g35100 (Fragment) | 1122 | 1e-120 |
| Q5DVT5 Plasma membrane intrinsic protein 2;5 | 1058 | 3e-113 |
| Q70AP3 Aquaporin | 1056 | 4e-113 |
| A9PG56 Aquaporin, MIP family, PIP subfamily | 1054 | 8e-113 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G35100.1 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel | 1122 | 6e-123 |
| AT2G16850.1 PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel | 1061 | 7e-116 |
| AT3G53420.1 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel | 917 | 3e-099 |
| AT3G53420.2 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel | 917 | 3e-099 |
| AT3G54820.1 PIP2;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;5); water channel | 914 | 8e-099 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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