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Information for unigene UN18839

FASTA Sequence
Unigene ID: UN18839Length: 1390 SSR 
CGTGGAAACAATCTTTTAACACCATTGAAAACTATGCCACTCCAGCTTTATGCGTCATTGCTGAGATTACAAGTCACACAACACAA
CCCATATATAATTAGGGTAAACATTAAAAGCTTGTTCATCAGTCGGAACGTTCAACGTTCCTAAGTATTCCAAGAAACCATAGATT
ATACATATTTTAAAGCATTTTAATGATTATAAATATGATGAAATAAAGGTTTGTTCAAAGGATCGATCAAAGCATGGTCGAGGAGA
TGTGATCAATGGGGAAAGGATTTCCCATGACATTGTCCATGAAGTAATGGTGAGGATGTGTTGCGTCCATTACTACAAACTGCATA
TCCTCCGATGGTTTCCAATGCCTTTTCCTCTGGTTTATGAACCAATTGTTTATCTGTTTCTGGTCCAGCCCGGTTGATTCCGCTAG
TGCTAACTTTTGCTGCTCCGAAGGGTAAGGCCATTTGTAGTGTCGGCTCCACCAGTCAAGTAGTTGTTGGCGAGCTTCCTTAGGAA
GCTTTCCTTTCTTCCTCTTCTTCATGAACTCTTGCTTGAGACTGCCTAAGTAACCACTGTACTTGCGCAAGAGCTGTCCTTTAAGC
TCCCTATCCTCTGCCTGCGGATCTACAAATTCATTGTTCATATCGACTTCTTCCTCAGATGACCCATTGTTGTTTCTCTCAATAGC
TGCCTCTCCATAACCAGAGAAGGAGGAAGGCGAGGAGAGAGAAAGGGATTTGAATTGACACTCAACGTGTTGAAGGAAGACCATAG
CTTCTTTAAAAGGTTTAGAGAGTTCTTGCTCGTACTTCACGAGCATTTCACAGTAAGCTTCCATGAACTGATCAAGCCCTGGATCT
TCACCTAAAGACCCTGTGGGTCCCATCGACGCTGCAGCTGCTGCCGCAGACGAGCATGTTTCTTCCAGCCTCGTCTGCACTTCCGG
TGGAGCTCCCACCTTCTGGCAATTGACATAGGCGAGCAAGAGGCGGTGGTAGTGAGGATGAGCCATGATTTTGGCCTTGACAGAGG
CTGAAGAACAGGGATTGAGTCCTCCTGTGAGGAGTTCGTTTTGGTGATTGATCTCCATGAAAGAATAAGCAGGAGCACCAGAGGAA
GGAGAACAAGAAGATGTAACGTTGTTCTTCGCTTCTTGAGACGGAGGAGTTAGTGATTGAGGAAAAAGGGAGTTGCTTTGTTGGTG
GTGTGACTGATATGCATAACCATCATGTTGTTGTTGATGTTGATGTTGTTGATCATGACCATGATGTTGTTGATGGGATGTTATGA
TGGGCATCATCATCATCATCATAGGACACATCGGACCATCACTATTATCCCCGGCAAAAGCCATTGGACGAGAAGTGCTGTTGGAA
CCACTCTCCATCTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ADD64788 SHOOT MERISTEMLESS [Brassica rapa]19996e-222
ADD64787 SHOOT MERISTEMLESS [Brassica napus]19791e-219
AAM89270 homeodomain protein BOSTM-1 [Brassica oleracea]19584e-217
Q9M6D9 RecName: Full=Homeobox protein SHOOT MERISTEMLESS19047e-211
NP_176426 homeobox protein SHOOT MERISTEMLESS [Arabidopsis thaliana]18132e-200

Swiss-Prot top hits (Blast detail)Scoree value
Q9M6D9 Homeobox protein SHOOT MERISTEMLESS19043e-212
Q38874 Homeobox protein SHOOT MERISTEMLESS18131e-201
P46608 Homeobox protein SBH111589e-126
O22299 Homeobox protein knotted-1-like LET610872e-117
Q41853 Homeobox protein rough sheath 17546e-079

TrEMBL top hits (Blast detail)Scoree value
D4NZH7 SHOOT MERISTEMLESS19994e-222
D4NZH6 SHOOT MERISTEMLESS19799e-220
Q8L5J5 Homeodomain protein BOSTM-119582e-217
Q0Q6S0 Shoot meristemless17891e-197
D3IWE9 Class I KNOX homeobox transcription factor STM-like 212128e-131

Arabidopsis top hits (Blast detail)Scoree value
AT1G62360.1 STM (SHOOT MERISTEMLESS); transcription factor18147e-203
AT4G08150.1 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor7662e-081
AT1G23380.1 KNAT6; DNA binding / transcription activator/ transcription factor6561e-068
AT1G23380.2 KNAT6; DNA binding / transcription activator/ transcription factor6434e-067
AT1G70510.1 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor6336e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  33%
 
92  22%
 
122  22%
 
72  22%

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