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Information for unigene UN18847
FASTA Sequence |
Unigene ID: UN18847 | Length: 626 |
| SNP | GGAAACCTTATCCAGAAACTAAACTTCAAATGACTGTCTGAAGGCGAAATCCTTCTGTACCAAGAAGATGTCTCTTCTCTGTTTCA
ATTCTCTCGCTCCTCTCTCTCCTCCAAGGCTTCAAGTTTCGTCTTTCGCTTCACCAGTTTTAGGCCTTAAACCCAACACCGTCGAG
ACCAAGAACAGAGTCTCTCTGAGTGCGTACAGCTTGAGCATCAGCAATGGAAGAGCAGCGATTGTGAAGGCAGCTGCTTCTTCTGG
TGTGGACGGAGCAGCTGAGCCCGAGAGCAGTGAGGAACCGCCTAAGACTGTTGACAAACTACCGTTGGAGTCAAAAGAAGCTAAAG
AGAAGCTGCTGATGGAACAGAGGATGAAGATGAAGCTGGCCAAGAAGATTAGGCTAAGGAGGAAACGTCTGGTTCGTAAGCGTAAG
TTGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAGCTCAAGAATGTCTAGAGATGACTCTCTTCGCTCTCTCAACTTTT
ATTGTAATGTTGTTTGTAAACTTTCCGGAATTTGAAATGTAGACATTGTTTTTGGATTTAATCTCAAGCTGAGAGAGTTCTTTACT
TCTTTAAAAGGATTCATTACAAAG
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GenBank top hits (Blast detail) | Score | e value |
XP_002878118 hypothetical protein ARALYDRAFT_486132 [Arabidopsis lyrata subsp. lyrata] | 465 | 1e-044 |
NP_191250 plastid-specific 50S ribosomal protein 5 [Arabidopsis thaliana] | 453 | 3e-043 |
AAK68822 ribosomal protein, chloroplast [Arabidopsis thaliana] | 453 | 3e-043 |
NP_001148929 50S ribosomal protein L40 [Zea mays] | 280 | 3e-023 |
NP_001042743 Os01g0278900 [Oryza sativa Japonica Group] | 267 | 1e-021 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9LER7 50S ribosomal protein 5, chloroplastic | 473 | 7e-047 |
P11891 50S ribosomal protein 5, chloroplastic | 224 | 5e-018 |
P27684 50S ribosomal protein 5 alpha, chloroplastic | 199 | 4e-015 |
TrEMBL top hits (Blast detail) | Score | e value |
B6T8T0 50S ribosomal protein L40 | 280 | 2e-023 |
A2WNG6 Putative uncharacterized protein | 267 | 8e-022 |
Q5NBK8 Os01g0278900 protein | 267 | 8e-022 |
B4FIS3 Putative uncharacterized protein | 264 | 2e-021 |
B6SM60 50S ribosomal protein L40 | 264 | 2e-021 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT3G56910.1 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) | 474 | 5e-048 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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