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Information for unigene UN18852
| FASTA Sequence |
| Unigene ID: UN18852 | Length: 1108 |
SSR | | GGATCCAAAACTCTCTCAATTCGCTCCAATGGCTCTTCTTCGTCTCCCTCCCATTTCCCTCCAATTTCTAGGTCACCAATCTGAAC
ACAAAACCCCTAATCCCGGCGTTTCGCTCGCCAATTTCTCCCTCCCTTGGTCTACTCCTCCTTCAGTATCTCGTCTCCATCTATCA
AAACCCAGAAATCTCACCTCTTGCTTCTCCGCTACTATCCAAGAGCCAATCCTCGAGTCTTCTTCTTCTTCTTCTGAAGAGATTTC
GAAAACCAGATTGATTGCTCAAAACGTTCCTTGGACCTCTACACCCGAAGACATAAGGTCCCTGTTCGAGAAATACGGCAATGTCG
TCGACGTTGAGATGTCTATGCACAAGAAGGAAAGGAACCGAGGTTTGGTTTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCATCA
GCTCTTCAAGCTCTCGAATCCTATGAATATGAGGGTCGTCGTTTGAAGGTAGCCTATGCAAAGGCCAAAAAGAAGAAAACTTATGC
TCCTCGTGAGAAGCCTACGCCGGTGCCTACCTTCAATTTGTTTGTTGCAAACTTGGCATTTGAAGCAAGGGCCAAGCATCTTAAGG
AGTTCTTTGATGCGGACACTGGTAACGTTGTCTCCACTGAAGTTATATTCCATGAAAATCCTAGGAGGTCTAGTGGTTACGGCTTT
GTCTCTTTCAAAACCAAGAAAATGGCCGATGCAGCGCTCCTTGAGTTCCAAGGAAAGGATTTCATGGGAAGACCAATCCGATTAGC
TCGTAGCAAACAGTTTGTGAAGTTGCAAGCAAAAGAAGGGTTGCAGCCACCTGATGAAGGATTATTTGGGGTTGGGTATCGGAATT
GAAGAGAAAACTTTGAGCTTTTGACAAACAAGAGGAGCGGATACATTACAACTACCAACCTTGAGTAAGTGGTGCAGAAGTAAGAA
GTACAAGAACGATCTAGTTAGAACAAAACCCATGTGGCTCTAAGAACTTGTTTTGTTAAGTTAACACAATGTTCTTATTTTTCTAT
TGGTTTTGATAGAAAATCTTGCATTTGTTACTATGTTGAATGTGTACTTATTTGGTTCCCAAAGAGCCCCATTTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_192643 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1008 | 4e-107 |
| BAD43393 putative protein [Arabidopsis thaliana] | 1005 | 8e-107 |
| XP_002872360 hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp. lyrata] | 993 | 2e-105 |
| NP_001078360 RNA recognition motif-containing protein [Arabidopsis thaliana] | 921 | 5e-097 |
| CAB78028 putative protein [Arabidopsis thaliana] | 695 | 7e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9USY2 Uncharacterized RNA-binding protein C1861.04c | 155 | 1e-009 |
| Q7SG09 Multiple RNA-binding domain-containing protein 1 | 140 | 7e-008 |
| P27476 Nuclear localization sequence-binding protein | 133 | 5e-007 |
| Q5AJS6 Multiple RNA-binding domain-containing protein 1 | 132 | 6e-007 |
| Q75A83 Multiple RNA-binding domain-containing protein 1 | 131 | 8e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6NPL0 At4g09040 | 1008 | 3e-107 |
| Q681I7 Putative uncharacterized protein At4g09040 | 1005 | 6e-107 |
| A8MS54 Uncharacterized protein At4g09040.2 | 921 | 3e-097 |
| Q9M0S3 Putative uncharacterized protein AT4g09040 | 695 | 5e-071 |
| C6TK63 Putative uncharacterized protein | 670 | 4e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G09040.1 RNA recognition motif (RRM)-containing protein | 1118 | 3e-122 |
| AT4G09040.2 RNA recognition motif (RRM)-containing protein | 921 | 2e-099 |
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 360 | 2e-034 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 196 | 2e-015 |
| AT5G19350.1 RNA-binding protein 45 (RBP45), putative | 124 | 5e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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