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Information for unigene UN18872

FASTA Sequence
Unigene ID: UN18872Length: 1698 SSR 
GGAGTCGATAGAGAAGCTGATTCCTCCTATGGCTGCTGCTTCACTTTCCGCGAATCTAGGAACTTCCTTCTACGGAGGTTGGGGAA
GTTCAATCTCCGGCGAGGATTACCACACCATGCTCGCCAAAACAACTGCGCCACGGCAACACTTTGCTAAGCTGTCACGGAAGCCA
ATCAGAGTACAACCAATGATGAAGAATGTCAACGAAGGCAAAGGCTTATTCGCTCCTCTAGTCGTTGTCACTAGGGACATAGTAGG
CAAGAAGAGGTTTAATCAGCTTAGAGGCAAAGCCATTGCTTTACACCCTCAGGTGATTACAGAGTTCTGCAAATCGATAGGAGCTG
ATGCAAAACAGAGACAGGGACTGATTAGGCTTGCTAAGAAGAATGGAGAGAAGCTTGGCTTCCTTGCTTGACATCCCTTCCTCTCT
GTATACAGATCCTCTTCTTCTTCTTCTTGTTTACTCTTAAAAAATAGAAACCGCATTTTCTCATTACGAATGTTGTGTGCATCATC
ACTCTTGAGATAACACTACTACTCTTTTGAAACAAGATGAATCTTTTATATATATGTATATGACAAAATATCACAATTGTTCTCGG
AGAAAGGTCACAGCTGAATTGGTAAACACAGATACATTCATGTAAAACCCTCAAAACTGTCTTATAGCCTAAACCACAACTTGTGA
AACAATTAATGGATTCAAAAAAAGATGGGGTAAGCTTCCTTCTTTTGATGATGTAATATCAATTCTCGTCCAAGAATCAGGAGAGG
TACTGAGAAGCATGCGCAAATCCCCAGAGCTCGACATTCTTCAACTCAAACTCTGTGCTGCTAGCTAAGCATTCGTTCCCAAATGT
TTCAGAAGGTCCACTTGTTGCTTTCAACGAATCTTCGTCTAAACAGAGCGCAAAGCTTCCTCCACCTCCAAACGCCAAAACTCGTT
CATACACATGTAGTAATATCGGTTGGCACCTGTAGGTCTAAATATGCGTGGTTGACCATAAATAGTAGTGAACAAGAATGTCTGGC
TTGTACCCTGATATTTCCTCTTAGGAGTAGTTGTTAATGGACATTCCAGCAAAGCACCAAAAACCGCACCTTGTTTGTCTCCAGCA
ACCAGTAAACAAGGACCAGGAAGCTCAGCGCTTTTACGAAGAAGCGTACGAAGGGATATGCCATGCTTCAACGTACTGTAAACCAA
GACCCATTTGCAACCTCTAACGATGTTAGGAAGACAAGCGTGCAAGAACTCGCACAAGTTAGGAGAGATAAAAGCAGAGCTCTCTG
TTAACTCCTTCATCTCCTCCCCTCCTCCACCCATCATAGTGGAAGAAGCTTGTTGTTGGTTCTTATTACAATCTTCTTCTTGTTTG
CAATTCTCAACAGACTCGTAGCTGTCCGTTCTGATCGGAGGAGGAGGAGGAGGTGATGATGATTCAGAATCTTCATTCTCGTTTCC
AGCACCAAATGAGAAGTACGAAGTAAACGATTTCCCCCCTGAACCCTTTGGAGAATCGGTGAGGGCAGAGCGAGGAGATGCAGATT
GGGAAGGGGAATCGGCGAAGAGATTCGAAAGCTTCTGCGAGACCTTGTCCTTTAGAGCATGCATTGCTTCGATCGTTTTTTTTTGT
CGGAGGAGACACGATGATGGACCGGTCTACAGATTCAGAGAGAGAGAGAGAGCCTGTCTCGCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_849938 TLD-domain containing nucleolar protein [Arabidopsis thaliana]5874e-058
AAK92708 unknown protein [Arabidopsis thaliana]5874e-058
NP_565326 TLD-domain containing nucleolar protein [Arabidopsis thaliana]5874e-058
AAM62834 unknown [Arabidopsis thaliana]5321e-051
NP_565327 protein PROTON GRADIENT REGULATION 5 [Arabidopsis thaliana]5302e-051

Swiss-Prot top hits (Blast detail)Scoree value
Q9SL05 Protein PROTON GRADIENT REGULATION 5, chloroplastic5308e-053
Q8NI08 Nuclear receptor coactivator 71785e-012
Q5ZMS4 Nuclear receptor coactivator 71776e-012
Q6DFV7 Nuclear receptor coactivator 71776e-012
Q8N573 Oxidation resistance protein 11704e-011

TrEMBL top hits (Blast detail)Scoree value
Q94A07 Putative uncharacterized protein At2g055905873e-058
Q9AT60 Putative uncharacterized protein At2g055905873e-058
Q9SL08 Expressed protein5873e-058
A5BPK0 Putative uncharacterized protein4978e-048
B9SQT9 Putative uncharacterized protein4871e-046

Arabidopsis top hits (Blast detail)Scoree value
AT2G05590.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).5872e-060
AT2G05590.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).5872e-060
AT2G05620.1 PGR5 (proton gradient regulation 5); electron carrier5315e-054
AT4G39870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins in 220 species: Archae - 0; Bacteria - 39; Metazoa - 1002; Fungi - 279; Plants - 129; Viruses - 34; Other Eukaryotes - 535 (source: NCBI BLink).3471e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  33%
 
82  33%
 
62  33%

Unigene MembersMember information