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Information for unigene UN18879
| FASTA Sequence |
| Unigene ID: UN18879 | Length: 1266 |
| SNP | CTCTCTGCTCGAGAGACTTCAAGAAAGAGAGTCAAAGTCTCTATCGCCTTTTCTCTATTCTCACTACACGCCAAAGCTGAGACCAC
CTTCTATCTCTCTCTCTGTCTCTATGGCTTCCTCTCTCACTGCCCAAATATCATGTGGCACTCAGCCCTCTGCCCCTTCTTTCTCC
GGCCTCCGCCATACTTGTCCCATGCTCGACGCCGCCGTCTCCTTCTCCCACCGCGTCCATTCCTCAATCCGTCTCGTTTCCTCCTC
GCACCGTTCTCCTAGAGGCGTCGTCGCCATGGCCGGATCCGGCAAGTTTTTCGTTGGAGGAAACTGGAAGTGTAACGGGACTAAAG
ACTCCATCGCCAAGCTTGTCTCCGACCTCAACAGTGCATCCTTGGAAGCTGATGTAGATGTCGTCGTGTCGCCTCCCTTTGTGTAC
ATCGACCAAGTCAAATCTTCCTTGTCAGACCGTATTGAAATATCTGGTCAGAACTCTTGGGTTGGGAAAGGTGGAGCCTTCACTGG
TGAAATCAGCGTGGAACAGCTCAAAGACATTGGATGCAAGTGGGTTATTCTGGGGCACTCCGAAAGGAGACATGTCATCGGTGAAG
TTGATGAGTTTATTGGGAAGAAAGCTGCGTATGCATTGAGTGAGGGTCTTGGAGTAATAGCTTGTATCGGGGAGAAGCTAGAAGAG
AGGGAAGCAGGCAAGACTTTTGATGTTTGCTTCCAGCAATTGAAGGCCTTTGCTGATGCTGTGCCTAGCTGGGACAAGGTAGTGGT
TGCATACGAGCCAGTGTGGGCAATTGGAACTGGTAAAGTTGCATCTCCTCAGCAAGCACAGGAAGTCCATGTAGCTGTCCGTGATT
GGCTCAAGAAGAATGTTTCTGAAGAAGTTGCTTCCAAAACGAGAATCATATACGGAGGTTCTGTCAACGGAGGCAACTGTGCAGAG
CTTGTTAAAGAAGAAGACATTGATGGATTTCTCGTGGGTGGTGCCTCCTTGAAGGGGCCTGAGTTTTCGACCATTGTGAGCTCTGT
CACGTCCAAGAAAGTTGCTGCTTGATTTGACAACTATCAGTCACGGAAATCGCACCTGTGAACAAAAGATGAGATGAGAAATAAAA
GGAAGGTTTGGCGAGCTTGGTGTTGTTGTTGTCTTCTTCTTTGTCCTTGAACTAATAAATAGAAAACAAAACTTGTTTCATGAGCT
ATATTGGTTTTGAAGAGAGTTTGGTTCTGCAACAGTGAGAAAAAAGGGTCTTTGATTAAAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880361 hypothetical protein ARALYDRAFT_900526 [Arabidopsis lyrata subsp. lyrata] | 1389 | 3e-151 |
| NP_179713 triosephosphate isomerase [Arabidopsis thaliana] | 1349 | 1e-146 |
| NP_001077931 triosephosphate isomerase [Arabidopsis thaliana] | 1312 | 3e-142 |
| P48496 RecName: Full=Triosephosphate isomerase, chloroplastic; Short=TIM; Short=Triose-phosphate isomerase; Flags: Precursor | 1310 | 4e-142 |
| XP_002529248 triosephosphate isomerase, putative [Ricinus communis] | 1304 | 2e-141 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKP6 Triosephosphate isomerase, chloroplastic | 1349 | 6e-148 |
| P48496 Triosephosphate isomerase, chloroplastic | 1310 | 2e-143 |
| Q9M4S8 Triosephosphate isomerase, chloroplastic | 1283 | 3e-140 |
| P46225 Triosephosphate isomerase, chloroplastic | 1138 | 2e-123 |
| P12863 Triosephosphate isomerase, cytosolic | 809 | 2e-085 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8MRE8 Triosephosphate isomerase | 1312 | 2e-142 |
| B9STC9 Triosephosphate isomerase | 1304 | 1e-141 |
| D6N3G7 Triosephosphate isomerase | 1273 | 6e-138 |
| A9PH17 Triosephosphate isomerase | 1253 | 1e-135 |
| C6TK22 Triosephosphate isomerase | 1253 | 1e-135 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G21170.1 TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase | 1392 | 5e-154 |
| AT2G21170.2 TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase | 1313 | 7e-145 |
| AT3G55440.1 TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase | 807 | 3e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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