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Information for unigene UN18883
| FASTA Sequence |
| Unigene ID: UN18883 | Length: 1836 |
| SNP | GGAGATTAGAAAAAACAACAACAAACAACTTCTCTCCTCCCGTCACAACAATCCTCTAATCTCCGACGAAACCTCTCCGAATCAAA
ACCCTAATTCCCCAAAACCCGATCCTTCCCCTCTCGATCTTCTTCTTAGTCGAATCTCACATCAGCAGCGAAGATGGTTTTAGCGG
AGCTCGGCGGGCAGATCGCCAGCGCCTTGCAGAAGATGAGCAACGTGACGATCATCGACGAGAAGGCTCTCAACGAGTGCTTGAAA
GAGATCACTCGCGCTCTTCTCCATTCCGATGTCTCTTTCCCTCTCGTGAGGGAGATGCAGAACAATATCAAGAAGATCGTTAACCT
CGAGGAGCTAGCCGCTGGCCACAACAAGCGACGGATCATTGAGCAGGCTATCTTTAGTGAACTGTGTAAGATGTTAGATCCAGGAA
AGCCTGCGTTTTCGCCCAAGAAGGCTAAACCTAGTGTTGTTATGTTCGTTGGATTACAAGGTGCTGGTAAAACGACAACGTGTACC
AAATATGCTTATTATCATCAGAAGAAAGGTTACAAACCTGCTCTGGTGTGTGCCGATACTTTCAGGGCTGGTGCTTTTGATCAGCT
CAAACAGAATGCTACCAAGGCTAGGATTCCCTTTTATGGAAGCTACACGGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTG
ATACGTTTAAGAAAGAAAACTGTGATCTTATTATTGTTGACACCAGTGGTCGACAAACAAGAAGCTACTCTCTTTGAAGAAATGCG
TCAAGTTGCTGAAGCAACGAAACCAGATCTTGTTATATTTGTCATGGACAGCAGTATTGGTCAAGCTGCATTTGACCAAGCTCAAG
CATTCAAGCAAAGTGTTGCCGTGGGAGCTGTGATCATCACTAAGATGGACGGTCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTT
GCAGCGACAAAGAGTCCTGTGATATTCATCGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGACGTCAAACCGTTTGTCAG
CCGTCTCTTAGGAATGGGTGATTGGTCTGGATTCGTGGATAAACTACAAGATGTGGTACCTAAAGATCAACAGCCTGAACTTCTGG
AAAAGCTCTCTCAGGGTAACTTCACGTTGAGAATTATGTACGACCAGTTCCAGAACTTACTGAACATGGGCCCACTTAGTGAGGTT
TTCTCAATGCTGCCTGGAGCTGCTGCTCAAATGATGCCTAAAGGACACGAGAAAGAAAGCCAAGCCAAGATAAAGCGATACATGAC
AATGATGGATTCCATGACAAACGAAGAACTGGACAGCTCGAACCCGAAGATGTTTAACGAGTCAAGGATGATGAGGATAGCGAGAG
GGTCTGGGAGGATGGTAAGAGAAGTGATGGAGATGTTGGAAGAGTACAAGAGGCTAGCAAAGATGTGGAGCAAGATGAAAGGGCTC
AAGATCCCAAAGAATGGAGACATGAGCGCACTCTCGAGAAACATGAACGCTCAGCACATGAGTAAGGTCCTTCCTCCTCAGATGCT
CAAGCAGTTTGGAGGCATGGGCGGTCTGCAGAGTCTCATGAAACAGATGGGTTCTGGCAAAGACATGATGGGTATGTTTGGTGGCG
GCAAAGACAAATAGTTTCTTTCTTCCTTTCTTACACCCAAAATCTACACCTTCCTCATTTGTCGTTTACTAGTTTTTTTTTCCTGT
GAAAATATCAACGATTTCCCTTTTTTAATTTTCCTGTATTTCCATTCGCCTTTCAGTTTATCTTTCTTTGTATTTTTCCTTTCTCG
AAGTAAAAGATTTTCAACTATGTTTTTTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAG29734 signal recognition particle 54 kDa protein 2 (SRP54), putative [Arabidopsis thaliana] | 1470 | 2e-160 |
| NP_564535 signal recognition particle subunit SRP54 [Arabidopsis thaliana] | 1470 | 2e-160 |
| AAA66200 signal recognition particle 54 kDa subunit [Arabidopsis thaliana] | 1464 | 1e-159 |
| XP_002894146 signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata subsp. lyrata] | 1455 | 1e-158 |
| XP_002517663 signal recognition particle 54 kD protein, putative [Ricinus communis] | 1397 | 6e-152 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49967 Signal recognition particle 54 kDa protein 3 | 1470 | 8e-162 |
| P49972 Signal recognition particle 54 kDa protein 2 | 1350 | 7e-148 |
| P49971 Signal recognition particle 54 kDa protein 1 | 1304 | 1e-142 |
| P49966 Signal recognition particle 54 kDa protein 2 | 1303 | 2e-142 |
| P49968 Signal recognition particle 54 kDa protein 1 | 1248 | 5e-136 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RV94 Signal recognition particle 54 kD protein, putative | 1397 | 4e-152 |
| B9GIF9 Predicted protein (Fragment) | 1381 | 3e-150 |
| A9PHG6 Putative uncharacterized protein | 1374 | 2e-149 |
| B9IG64 Predicted protein (Fragment) | 1347 | 2e-146 |
| C5XLK5 Putative uncharacterized protein Sb03g036030 | 1326 | 7e-144 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G48900.1 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) | 1470 | 7e-163 |
| AT5G49500.1 signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) | 1350 | 6e-149 |
| AT1G48900.2 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) | 1084 | 4e-118 |
| AT1G15310.1 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding | 1052 | 2e-114 |
| AT5G66970.1 GTP binding | 322 | 9e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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