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Information for unigene UN18897
| FASTA Sequence |
| Unigene ID: UN18897 | Length: 1083 |
SSR | | CCATAAACTAAGGCTTTTTCACCATCTCTCGCATTAAATTTTCAGCAATAAAAGGTTTTGGATTACAAATAAAGAGAGTTAAAAAA
CAAACTGAGTTATGTATATTGTAAGGGACACAAATCATCTAGAGAGGCAACCTTTCTTAGGTGAAATATTCAAATACAGAAAGGGG
AAAAAATGTCCGAGTGGAAAAGGAGTTAAGAAATAAGTCTGTGGATGTGTGTGGGACTAAAACTCGAGGTGGGTAGGGGCGTTGGT
GGTGGTGGTTATGTGCTCTTCATAATGTATCCCAAAATTAGACCGATTAGTCCCACCAGAAGAACGTACATCAAAGGGATACCACT
TTGGCTTCTCTTGCTGTCACGCCTCGACTGGTCCAGTTCTCTTTGAAGTTTGTTGTTCAGTTGAATGGCAAACTGTTTCTCCTCGG
TTAGCTTCGTGATGAGAGCCCTTGCCTCAAATGTGTTTTCTTGAGGTTCAGCCTTGTCTGCGCTAAATTTCTGAAAAGAAAATTCA
GAAGCCTGTCCGTTATCAGAAACCGAAGCCCTTGGTGAAGATCCCTCTTCAGAACCTTCGCGGACTGGTGATGGTGGTAGTGGTGG
AGCAACATAAGTAACTCTCAGCTTAGTCTCCTCAACCAAATACCCAGCCTCTTTACTAAACATCTCAGGAGTAACATCCTTGGCTG
TGATACCAGGACTAGCAGTTACACCTTGAAGCAGAAACTTGTCCTTGCACTGCATATCCGCAGGAGCTTCCTTTTGAGCTTGCATG
GTCACAAGAACTTCACAAGTGGACCGTGGAAGAACAACTCCAGTGTTAGGCCTAACGCAATACTTCTTCGGATTCGTTGTCTTAAC
CTTAAAGGCGACATGATTGTCGGTCTTGTTGGTCAAGTAAAGAGAGCATGAGATCTGTTTCTTCAATTCAAAAGGGAACTGAAGGT
CGAGAGGCTCGACGGTGAGAAGCTCGCTGTTACTCATCTCGATCAGATCGCCGGAGACTCAATCAGATTCGTCTCGTGACGCGCGT
CTCCGGTTCCGACAGAACAGTCGTCGATCGAGAGAGAGAGAAAGAGAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567101 vesicle associated protein [Arabidopsis thaliana] | 1069 | 3e-114 |
| AAM63134 putative VAMP-associated protein [Arabidopsis thaliana] | 1057 | 7e-113 |
| NP_182039 VAP-like protein 12 [Arabidopsis thaliana] | 960 | 1e-101 |
| XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata] | 960 | 1e-101 |
| XP_002511657 vesicle-associated membrane protein, putative [Ricinus communis] | 881 | 2e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60119 Vesicle-associated membrane protein-associated protein C16G5.05c | 188 | 2e-013 |
| Q10484 Uncharacterized protein C17C9.12 | 181 | 1e-012 |
| Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 175 | 6e-012 |
| P40075 Vesicle-associated membrane protein-associated protein SCS2 | 173 | 1e-011 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 171 | 2e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VZ95 At3g60600 | 1069 | 2e-114 |
| Q8LDM1 Putative VAMP-associated protein | 1057 | 5e-113 |
| Q9SHC8 At2g45140 | 960 | 9e-102 |
| B9RD68 Vesicle-associated membrane protein, putative | 881 | 1e-092 |
| A8W459 Vesicle-associated protein | 866 | 7e-091 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 1070 | 9e-117 |
| AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule | 962 | 3e-104 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 816 | 3e-087 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 782 | 2e-083 |
| AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein | 652 | 3e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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