RadishBase

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Information for unigene UN18933

FASTA Sequence

Unigene ID: UN18933	Length: 1400	SSR
CCATAGCAAGCGGTTGCTCAGCTTTGATAACTATGCCGGTAGACACAATCAAGACGAGGTTGCAGGTTTTAGACGCGGAGGAGAAC GGGAGGAGACGAGCGATGACAGTGATGCAGACGGTGAAGAGCTTGATGAGGGAAGGAGGGTTTGGGGCTTGTTACAGAGGGTTAGG ACCAAGGTGGGTCTCAATGTCAATGTCTGCAACAACTATGATCACAACCTACGAGTTCTTGAAGCGTCTTTCCACAAAGAAGCAGA GATGATATATGATATATAAAGTTATAAACCATTCATAGTCTAAGTTTCTCTGTTTCTTGTGTTGAAATGAAGAAACGTAATGGGCA AATCTAAACCAGACGCATTTGATTGGGTTTTAAAAATGTTTTTCCTCTCTAATAAACAAACATAAAACAGAACAAAGAGGGCTAAC TAGCGCCTAAAGATAAACCAAATCACAAGAAGTCTTAAAACCAACAAATCTGATCTAACCAAACAGTTAGGGGATTGTTCATAATA TGCAAAAGCAAATAGACAAAGGCGGGGGGCAATAAACAATGAGTTTTTTTTTTTTTAGGATCGAGCTCTCTTGTTGCTGCAAGATG GGCACTTGTACTGCTTGATGTGCTCAGCCCTGGCTGGTGTAATCTTCACACACTTGCCATGGAACCAGTTCTCACAGAGGTCACAG CAGATCCAGAACTCATCGGCGGCATAGCTCTCACCACATGCCCCACATTGTGTTTCCCCTTGCTCATCATCATCTTCATCATCCTC ATCCTCTTCCACACCTTCCTCTTCCTCTTCATCTTTGGGCTCTGGCTTTGAGTACTTGGGCTTAGGTTCTGATCCTCTCTTGGAGT TTGACTTGGATCTGTTGCTGCTGTTGTTGGAAACAGAGGACTTCTCCTTTGATTGTTTCTTTGCAGTGCCAGCCACAACCTCGAAT ATTGATGGGAGGTCATTCATCATATTGAAAAGCCGTTTCCTATCAGCTTTGTCAAATCCAAACCTGGCTCCAAAAAAGAAAGCAAC AGCAAGAAGCCATGCATCACTGTGGACAGCAACAAGGGACAACCAATCCTTCTCCATCATCCCGTCTCGGGCAAAGTTGATACCCA AGACAGGCTCCGGGAGCTCCGGGGGAACCTCTTCAGCTGGTAGATTCACTTCCCGGTGCTCATTCGGGTGTCCATAAAGGCACAAG TTCTCCTTCTCTGGATCGCAAAGTCGGTAAAACTCCTGAACATCAGTGGTTAAAGCCTTAATCATGCCATTCCTACGACCCTTAAA ATCCCTAAAAACCTCCTCCACCGTTCGTGGGTTGTACGCTGCACCACCACCACCACCGTCCATAATCCTTTTACACACAGAAGGAA GTATTTTGACTTGCCCTGAGCCAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAE98515 nucleic acid binding protein - like [Arabidopsis thaliana]	1240	7e-134
NP_197993 alfin-like 4 protein [Arabidopsis thaliana]	1239	9e-134
XP_002874304 hypothetical protein ARALYDRAFT_910695 [Arabidopsis lyrata subsp. lyrata]	1237	1e-133
ADL36568 ALF domain class transcription factor [Malus x domestica]	1145	7e-123
XP_002280895 PREDICTED: hypothetical protein [Vitis vinifera]	1131	3e-121

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	1248	3e-136
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	156	1e-009
Q5RHD1 Lysine-specific demethylase 7A	127	3e-006
Q6ZMT4 Lysine-specific demethylase 7	126	4e-006
P0CF52 Lysine-specific demethylase 7B	125	5e-006

TrEMBL top hits (Blast detail)	Score	e value
Q0WWI3 Nucleic acid binding protein-like	1240	4e-134
Q2HIV6 At5g26210	1239	6e-134
B9IKC9 Predicted protein	1117	8e-120
B9HD31 Predicted protein	1112	3e-119
Q06A76 PHD4	1110	5e-119

Arabidopsis top hits (Blast detail)	Score	e value
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	1249	2e-137
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	1019	1e-110
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	1013	5e-110
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	943	7e-102
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	915	1e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			29%


6	2			29%


9	1			14%


11	1			14%


8	1			14%

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