Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN18939

FASTA Sequence
Unigene ID: UN18939Length: 1964 SSR 
GGGCAACAGTTTCAGCAAGTCGATCAGTCTTTCCAGATGCAGCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTTAA
GAGGGTGTTTTTGGAAGGCAATCCCTATCTATTGGGCATCACGATGTGTGTTTCGATGCTCCACTCTGTGTTTGACTTCTTAGCAT
TCAAAAATGATATCCAGTTCTGGAACAAAAACAAATCCATGGAAGGACTGTCTGCAAAGTCTGTTGTACTGAACTTCATCTGTCAG
TTTGTCATCTTCCTCTACCTGCTTGATAACGACACCTCATGGATGATACTGGCTAGTTCCGGAGTTGGCGTCTGCATCGAGTTCTG
GAAGATAGGGAAAGCCATGCGAATAGAGGTTGATAGGAGTGGAATGATTCCAAGGCTGAGGTTCCACGACCGTGAGTCCTATGCAA
GCAACAAGACCAAAGAGTATGATGACATGGCCATCAAATTCTTATCATATGTGCTCCTCCTCCTTGTGGTGGGATTATCAATATAC
TCTCTCGCTTACGAGCGCCACAAGAGCTGGTATTCATGGATCTTGTCTTCGTTAACAAGCTGTGTCTACATGTTCGGTTTCATCAT
GATGTGTCCTCAGCTATTCATCAACTATAAGCTAAAGTCAGTGGCGCACTTACCATGGAGACAGATGACGTACAAGTTCCTCAACA
CCATTATTGATGATCTCTTTGCCTTTGTCATCAAAATGCCGATTCTGAATCGGCTTTCTGTGTTCCGTGATGATGTGATATTCTTG
ATATACTTATACCAAAGGTGGGTTTACCCTGTGGACAAGACACGTGTTAACGAGTTCGGTTTTGGAGGTGAAGACGAGACTGCAGA
GAAGAAGTTGATCACTGAGAAACAAGAAGAAGAAGAAGACAACAAGAAGACAAACTAAGTTTTTTTTTCTCTCTTCCTCCTTTATT
TTTTTAACTTTTATACCACTTTTTAAACTCTGATTTTGTAACACTTAAGTTATAGTTTTTTAATTTTTTTTTTTTTTAACGTCAAC
TCTCGAGACGCATTAAATATTTTACTCAAACTTTTAATGGTTTTGTTTGAAGTTATTAATGTCAACTTTTTACTCAAGTATTTAGC
CATTCATTGACTTCATCAGGAACATGATTTCCAATTTGCAAAGTTGACAGTGTTCCTCATTGTTCTCCTACCAACCCCTCCACTGC
CATTCCCTTTCCTCATCATTGCCACAAACTCTCCATAGTCTATCTGTCCATCATTGTCTTGATCAATGTCTTTGATCATTTCATCA
AGATGTGAATCATTTATACCAAACTCCTTCAAAGCCTGTTGAAGCTCATCAACAGTGATGTAACCACTTCCATCTTTGTCAAAGAA
AGAGAATGCAGCCACTAGATTCTCCTCTCTCTCCAGCTTGTTCAAATGGATTGTTGCTGCTAAAAACTCTCCATAGTCTATTGATC
CATTCTCATCAACATCAGCTGAACGCAAGAGTTCTTGGATCTCTGATTCCATAAGGTCTGCACCAACGCGCTTCACAGCGTCTTTC
AACTCTTCAAATGTGATGGTGCCACTGTTATCCGTGTCTATCATTCTGAACAGCTCTTTGAGCCCACCGATCTCTTCCTCAGATAG
TCTCTCTGCAATCACTCTGAAAGCCATCTTCTTAAGTTTGTTCATTGCAGAGAAGTTCTTCAGGCGTGACAGTACTGCACAGTCCA
GAGGTTTGTCTGGAGCAATCTTATCATCCACAATCCATGGGTGACACAACACTTGATGAGCAGTTAGTCTTTTCTTTGGATCTTTC
TCGAGCATTTTCACTATAAGATCCTTAGCACTCTCTGAGATGCTAGGCCATGGACTGATCTCAAAGTCCAGCTTTCCCTGTAGAAT
CTTTCTGAAGATGCCAAACTCACTCTCATCCCAGAAAGGAGGAAAGCCACATAATAGAATGTAGAGGATAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAA97243 unnamed protein product [Arabidopsis thaliana]15203e-166
NP_680213 transmembrane CLPTM1 family protein [Arabidopsis thaliana]15203e-166
BAD95341 hypothetical protein [Arabidopsis thaliana]15203e-166
BAH20401 AT5G23575 [Arabidopsis thaliana]15203e-166
XP_002872064 hypothetical protein ARALYDRAFT_489219 [Arabidopsis lyrata subsp. lyrata]15203e-166

Swiss-Prot top hits (Blast detail)Scoree value
Q42396 Calcium-dependent protein kinase 1212522e-136
P28583 Calcium-dependent protein kinase SK511186e-121
Q38869 Calcium-dependent protein kinase 410505e-113
Q39016 Calcium-dependent protein kinase 1110334e-111
Q06850 Calcium-dependent protein kinase 19709e-104

TrEMBL top hits (Blast detail)Scoree value
B9DI34 AT5G23575 protein (Fragment)15202e-166
Q56W51 Putative uncharacterized protein At5g2357515202e-166
Q8VZJ5 AT5g08500/MAH20_615202e-166
Q9LT06 Gb|AAC97420.115202e-166
Q9FNN8 Cleft lip and palate associated transmembrane protein-like14692e-160

Arabidopsis top hits (Blast detail)Scoree value
AT5G23575.1 transmembrane protein, putative15201e-168
AT5G08500.1 transmembrane CLPTM1 family protein14691e-162
AT5G23580.1 CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase12521e-137
AT4G09570.1 CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinase10504e-114
AT1G35670.1 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase10487e-114

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  40%
 
91  20%
 
82  40%

Unigene MembersMember information