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Information for unigene UN18944
| FASTA Sequence |
| Unigene ID: UN18944 | Length: 2583 |
| SNP | TTTTTGTACCCCTCGCATTAGAAAAGTGAGTGTGGCGGGACCAAGTGTGTCTTCTTATAAGTTTAGATTAGGAACCAGATCGTGAA
AAAGGTTTTGACTATATGAAAACATAAGTTGATGCAATTAGACCGTCTCTAATAATTTTCTCATTTGTATGTTAGTTAATAATATG
GTTTCCAGACTCACTTTAGCCCTCTTTCCCTTGGTGAGAATATGTTTGGTTTATCCTTATGTGATTTTTGCTGTAAAGAGAGCTCT
GTCCTCTGGTAGAAATTGCATTTCCACATCTTCAGGTTTACAATTTAAGGGATACAAAAGAAAGGTCCAAGCTTTGCTTATCAAAT
AGTCTTATAGGTCAACTCCTCGGAGGAGTCTCCTCCCACTCTGTACTATCTATTGCAAGGCGGCTAGAAAGAGTTTCGATCACCAT
CCAGTACTGTTTTGTACAACCAAAATTTCTTATCTTATATGAGTTGCAACATTTAACTAAAAGCCAACTGATGGATGAAGTGTGTA
GTGTGAAGTTAAACTCTTGTGATGGGACACGCAGACCAAACACAAAGCGCCAAAAAGGAAGGAAAAGTCTTTGTCTCGATCTCTTA
CTATATTATATGAAAGCTTGCACGCGATGACTTGAACGAGGTCTTTCTTTCATCAAGCCTAAACCAATCACTTTCTAGATTCCTTT
AGCTGTGTCCTAAAAAAGATTTCACTTTTCTCATCAACATATCCAATATCCAGAAACAAAAGAATAATGGATTCTTTGTCATTTTC
TTCGATGAAATCTATGTTGATCGAAGCTCGAGGCTCGCTAAACTCGCGTTTGTCGGAGTTTGAGCCTCTGGCTCTTGTCTTTACCC
CGCTCATCACACTTTTTCTAGCGCAGGTCATCGGATCTGTGTTGGGCGTTGTCCACGAGAAAGGCCTCAAAGCATGTCTTGTGGGG
TTTATCATGGGATTCTTCAAAAAGATCCCTGGAGTCCAAAGCTACATAGATGCAGAGAAACAAAAGGTTGTTGATCAGTTACAATC
TGGTGGAAACTCTAAGAAAAATAACTGGGCTAAAGAACTGCCAGTAAGAGGTCTAGGTGTCCAAGTTCTAGAGAAAATGGAGTCTG
AGAAGAGGAATGATCCTACTTGGCAAGGCAAATGCTCCGGCACTGTATACATAGGTGGAAGCGAGTCTGAAGGACATTTTACATTG
ATAAACCAAGCGTGTTCAATGTTTGCGCATACCAATCCGTTGCATATAGACGTGTTCCAGAGCGTGGTGCGGTTTGAGTCAGAAGT
AGTGGCAATGACTGCTGCTTTACTCGGGAGCAAAGAAGCGGTTTCAGGAGAAGAGATATGCGGAAACATGACGTCTGGAGGTACTG
AGAGTATTGTGTTGGCAGTGAAGTCGTCTCGAGACTATATGAAGTACAAGAAGGGAATCAAACGGCCAGAAATGATTATACCTGAA
TCGGGTCACTCGGCTTATGATAAAGCGGCTCAGTATTTTAACATCAAGTTGTGGCGAGTTCCAGTAGGCAAAGACTTCCGAGCTGA
TGTGAAGGCTATGAGGAGGCATATTAACAGAAACACCATCATGATTGTTGGATCAGCACCAGGATTCCCTCATGGCATCATTGATC
CTATTGAGGAGCTTGGTCAACTGGCTTTTAGCTATGGAATATGCTTCCATGTTGACCTTTGCCTTGGTGGTTTTGTGTTACCTTTC
GCTCGTAAACTTGGGTACGAGATCCCAGCTTTTGATTTTTCTGTAAAAGGAGTCACTTCAATCTCGGTGGACGTGCATAAATATGG
TTTGGCTCCTAAAGGAACTAGTACAGTTCTCTACAGAAATCATGAGATTAGAAAGCACCAATTTGTTGCTGTAACTGAATGGTCAG
GAGGACTATACGTGTCTCCAACTATAGCTGGGAGTAGGCCTGGTTCTTTGGTTGCTGGTGCTTGGGCTGCCATGATGTCTCTCGGC
GAAGAAGGCTATCTAGAAAATACAGGAAAGATAATGGAAGCATCAAAGAGACTAGAGGAAGGTGTAAGAGGAATCAGTGAACTGTT
TGTAGTTGGAAAGCCAGATATGACAATCGTGGCGTTTGGTTCTAAAGCATTAGATATCTTTGAGGTTAATGACATCATGTCTTCAA
AAGGTTGGCATCTGAATGCACTACAGAGACCCAACAGCATTCATATATGTGTAACTCTTCAACACGTCCCTGTGGTCGATGACTTC
CTCCAGGATCTGCGTGAGGCTGTTGAAACTGTGAAAGCAAACCCAGGACCGATCACAGGTGGCTTGGCTCCAATATATGGAGCAGC
TGGGAAGATGCCGGACCGAGGGATGGTGAATGAGCTTCTTGTTAGTTTCATGGACAGCCAATACTAGTCAAGTTTCTTTTCCAAGG
ATTGAGTAAATTGATGATTATCACATTTTCAAGTTGCAAGAGGCAAAAACACTGTACATTCACAACCTGATTGTTTGGTGGTCTGT
CCTACTTAAATTTCATCACACTTTATAACAAAAAAAAAACTCATTTCGTTACATTACACATTCAGAAAAAGAAATAATAAAGATTG
ATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890754 pyridoxal-dependent decarboxylase family protein [Arabidopsis lyrata subsp. lyrata] | 2591 | 3e-290 |
| NP_174119 Sphingosine-1-phosphate lyase [Arabidopsis thaliana] | 2583 | 3e-289 |
| XP_002514887 sphingosine phosphate lyase, putative [Ricinus communis] | 2251 | 8e-251 |
| XP_002273495 PREDICTED: hypothetical protein [Vitis vinifera] | 2190 | 1e-243 |
| CBI27682 unnamed protein product [Vitis vinifera] | 2189 | 1e-243 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C509 Sphingosine-1-phosphate lyase | 2583 | 1e-290 |
| Q52RG7 Sphingosine-1-phosphate lyase | 1952 | 2e-217 |
| Q8CHN6 Sphingosine-1-phosphate lyase 1 | 1062 | 3e-114 |
| O95470 Sphingosine-1-phosphate lyase 1 | 1054 | 2e-113 |
| Q54RV9 Sphingosine-1-phosphate lyase | 1052 | 4e-113 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q549V9 Sphingosine-1-phosphate lyase | 2583 | 2e-289 |
| B9RMB8 Sphingosine phosphate lyase, putative | 2251 | 6e-251 |
| B9GZM5 Predicted protein | 2185 | 3e-243 |
| B7FAK6 Os01g0100900 protein | 1976 | 4e-219 |
| B8ACR6 Putative uncharacterized protein | 1976 | 4e-219 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G27980.1 DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding | 2584 | 7e-292 |
| AT3G17760.1 GAD5 (glutamate decarboxylase 5); calmodulin binding | 241 | 3e-020 |
| AT3G17760.2 GAD5 (glutamate decarboxylase 5); calmodulin binding | 241 | 3e-020 |
| AT5G17330.1 GAD; calmodulin binding / glutamate decarboxylase | 219 | 1e-017 |
| AT1G65960.1 GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding / glutamate decarboxylase | 201 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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