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Information for unigene UN18956

FASTA Sequence
Unigene ID: UN18956Length: 1498 SSR 
GAAAGTCCAGCGAGGGAGCTAAGGGTAGTAATAATGGCATCTGGATTGACGATATGGAGATGTCTCCGGATTGGAACTATGGAGTT
AAAACGTTAAAGAAACCTCTGAATGGAGAGAAAGATAGTTTAGCACCTTCTTATGAGCATGGTTCTGCAGAAGAAGTTATGTCTCA
GCAAGTTGGAGATCGAAGAAGCATTGGTATGTTTCCAAGTGTAGGTGAAAAGACTGTAGCTTCTTCGCATCATGGTTTCAGCAATA
ACTCGGCTCCTCCCATCCAAGCATTTAGTCAGATTCAGAGTGCATTGCCTTACCAAAACACGCCAGTAGCTGTGGGAGGAAGTCAA
GTGCTGCCACCTCCTCCTGCTGCTGCTGCTGCTACGCATCTTCCTGAGAATGGAAATGCTGTGAGCAGAGAAGAGCTCAATCATAT
TAGTAACATCAGCATCTCTAGCACAACTTTTGGAAACGGGCAGCCAATACAAACTTCATTCTACTTTAAATCCCATACAGTCAATG
CAGATGCTCAAGTGTATGGACAAAAGGAACAATCTTCACATAGTCAGACTGACATCCTTGGTAATAACTCCATTCATACCGGAGTA
GTTCCAGCAGTTACTACATTACAGATAAACAACAGCGACAGTTTGGTCTCGTTAGCTGAGAATCCAAAGCCTTCTTCAGAGGAAAA
CAGGGACAAAAGGAGAGAAGAAGAAGCTGGCAAAGAACCAGATGGGAGAAAGACTGAAGAGACTGATGCAGAGAAGGTAGTGGAGG
AATAAGAAGATGATGAAGATGATGGGGCAGGCGACGAAAACAAGAAGAAAGAAAAGGATCCAAAGGGAATGAGAGCGTTCAAGTTT
TCTCTAGTGGAGATTGTTAAGGAGCTTCTAAAACCTGCTTGGAAAGAAGGTGGGATGAACAAAGATGCTTACAAAAACATAGTCAA
GAAGGTAGTTGACAAAGTAACCGGTGCAATCCAAACCGGAAGCATTCCTCAAACACAGGAGAAGATCGACCATTATCTATCAGCTT
CAAAACCAAAGCTTACCAAGCTTGTTCAGGCATATATCAGCAAAGTCAAGAAGAGCTAACTTAAGTGCAACTCTAGTGTTTCTTAA
AACAGAACCGCCACAGTAAGCTGGAGCTGCTGAGAAAGGTTAAAACTTGCGTCATCTCCTCATCTTTGAGGTTAGGCATTAAGGAT
CAGACAAGTATATGTTTGCTTCCCGTCTTCAGTTGTGTGTAGATTAGATACAACAATAGACATTTTATCAGGAAAAAGGAGATATT
TTTTTTTTTTGGTTGATTTAGTAATTTCTGAAAATTAGCCAAACCAGACCAAAAAGCTGCTTTTTTATCGAACTGTGTTGTCATGA
TATTAGGTAGTTAAGATCGTGTTTTATGAATTTATCAAACCTCTGTTTTTGATATGCTGCATTTTTTTGTTTGGTCTTGTAACACT
TTTGTTCTTTACCAGATTCCATGTTTAATTTCGTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002891459 predicted protein [Arabidopsis lyrata subsp. lyrata]6197e-062
NP_188494 zinc finger CCCH domain-containing protein 38 [Arabidopsis thaliana]5784e-057
XP_002885268 hypothetical protein ARALYDRAFT_898233 [Arabidopsis lyrata subsp. lyrata]5704e-056
BAD93829 hypothetical protein [Arabidopsis thaliana]5023e-048
XP_002527649 hypothetical protein RCOM_1278130 [Ricinus communis]3804e-034

Swiss-Prot top hits (Blast detail)Scoree value
Q9LIH5 Zinc finger CCCH domain-containing protein 385782e-058
Q6YYC0 Zinc finger CCCH domain-containing protein 552771e-023
Q84VG7 Zinc finger CCCH domain-containing protein 272206e-017
Q75K81 Zinc finger CCCH domain-containing protein 362162e-016

TrEMBL top hits (Blast detail)Scoree value
B9SNT0 Putative uncharacterized protein3803e-034
B9H468 Predicted protein3704e-033
B9HEQ3 Predicted protein3534e-031
A5BL82 Putative uncharacterized protein3401e-029
A2YR00 Putative uncharacterized protein2772e-022

Arabidopsis top hits (Blast detail)Scoree value
AT3G18640.1 zinc finger protein-related5791e-059
AT3G26850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G18640.1); Has 91 Blast hits to 91 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 49; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).2431e-020
AT3G26850.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G18640.1); Has 91 Blast hits to 91 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 49; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).2431e-020
AT2G33835.1 FES1; nucleic acid binding / zinc ion binding2205e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  80%
 
101  20%

Unigene MembersMember information