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Information for unigene UN18972

FASTA Sequence
Unigene ID: UN18972Length: 1706  SNP
GGAACCCGGCAGCCCGATCGGAAAACCACAAACTCCTCTTGTGGTTTTCACCGGGAAAAATAAATATCATCGGCTTGTGATATTTA
CCGGGAAAATAAATATCATCGTCTTTTAGCACCATATTTGCCAATGGCAGCAAAGTTTTTGAATATCGGCGGCTACATTGTCGTCT
TCTTCTTGTCATCATTAGCCACATTAGCCCCACAGGCTCGAGCACATATTGCCGACTTCGACGACTACTGGATGCAGCGTCAAAGC
GATGCTTTGAAACAAACTTTGGCCTCTTTTAATCCGGATCCACTTAACGTCACCAATCACTTTAACTACCATGTCGCTTTAGCATT
AGAGACCACGGAATCAATCAACGGCACAAGAAGATCGCTTTTACAGGCGAAGCGTGGTCGTAAAATGCAAAACAGAGGAAAATGCG
TAGCTCATAACCCGATAGACAAATGCTGGCGATGCGACCGTGACTGGGAGAAAAACCGTAAGAATCTAGCGGTTTGTGCCCTCGGA
TTCGGCAGGAGAACCAGCGGAGGAAAAGACGGACCGATCTACGTGGTCACCGACGCGTCAGACGACGATCTTATCAACCCTAAGCC
AGGAACGTTAAGACACGCGGTGACACGAGACGGACCGCTTTGGATCATCTTCGCAAGAAACATGGTCTTGAACCTGAAACAAGAAC
TGATGGTGACGAGCGATAAAACGATCGATGGACGTGGAGCTAGGGTTTACATCATGGGAGGTGCTGGATTAACGCTGCAGTTTGTG
AACAATGTGATCATACACAATATCTATATCAAGCACATTGTTCCGGGCATCGGTGGTTTGATCAGAGACTCTGAGCAACATATAGG
GCTAAGGACAAGAAGTGATGGTGATGGAATCAATTTGTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCGATGGCGAGATGTT
CTGATGGTATGATTGATGCGATTTTTGGTTCCACTGCAATCACTGTCTCCAACAGCCACTTCACTGACCACCAAGAGGTGATGCTT
TTTGGGGCCAATAACAAACACGTGATTGACAAGAAGATGCAGATAACAGTTGCATTCAACCACTTTGGTAAGAGACTGGAACAGAG
AATGCCTAGGGTCAGATTCGGAACGATCCATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATAGGTGGAAACATGA
ACCCTACAATCATTAGCCATGGCAACCGTTTCATTGCTCCTCCTAACGAACGAGCCAAACAGATCACAAAGAGAGAGTACACGCAT
TACGCGGATTGGAAGCTTTGGAATTGGCAATCAGAAGGAGATTACTTCTTGAACGGAGCTTACTTTGTGCAATCAGGAAAACCTAA
TGCGTGGAGCCCTAAACCGAAAAACCCTATCCCAAACAAGTTTGCGATCCGACCTAAACCGGGAACGATGGTCCGTGAACTCGCCA
TGGACGCAGGAGTACTGGGATGCAAACGGGGTCAAGCCTGCTGAGCGAAATTACCATTTTGTTGCCTTCCAACAAACAATGCTTGT
GCTCTTTGTATTTGCTTGTTGTCCAAGAAAAGAATGTGAGAAATAGAGGGAAAAAAGCAAATGAAAGTGGTTTTCTATATGATCGG
GGTTTTGTAATATTATTATTCTTGTCAGGATTCAGTTTCCTTTAAATAAAATTTTCCCCAAATATTTTCACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892805 hypothetical protein ARALYDRAFT_471616 [Arabidopsis lyrata subsp. lyrata]20661e-229
NP_172894 putative pectate lyase 3 [Arabidopsis thaliana]20463e-227
AAB69759 putative pectate lyase [Arabidopsis thaliana]20401e-226
NP_178375 putative pectate lyase 6 [Arabidopsis thaliana]18322e-202
XP_002875142 pectate lyase family protein [Arabidopsis lyrata subsp. lyrata]18303e-202

Swiss-Prot top hits (Blast detail)Scoree value
Q9M9S2 Probable pectate lyase 320461e-228
O64510 Probable pectate lyase 618328e-204
P40973 Pectate lyase12825e-140
P15722 Probable pectate lyase P5912735e-139
Q9SRH4 Probable pectate lyase 712126e-132

TrEMBL top hits (Blast detail)Scoree value
Q680M0 Putative uncharacterized protein At1g1442020462e-227
Q5U1E6 At2g0272018321e-202
B9S2B4 Pectate lyase, putative13437e-146
B9HJT8 Predicted protein (Fragment)13356e-145
B9IJT5 Predicted protein13132e-142

Arabidopsis top hits (Blast detail)Scoree value
AT1G14420.1 AT59; lyase/ pectate lyase20478e-230
AT2G02720.1 pectate lyase family protein18335e-205
AT3G01270.1 pectate lyase family protein12152e-133
AT5G15110.1 lyase/ pectate lyase12063e-132
AT5G63180.1 pectate lyase family protein10933e-119

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  10%
 
103  30%
 
113  30%
 
62  20%
 
91  10%

Unigene MembersMember information