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Information for unigene UN18980

FASTA Sequence
Unigene ID: UN18980Length: 1031  SNP
GGATTATATAGTTTCTCAAATTTTATTTATTTAATTTATCCTATTATCGGCATAAATATACGCTTGAACTTAAACATCCACCTATA
GTTCAGGACAATCCCAAGTTCAAGAAAAAACAGAATTTCATTAATCAAACAAAAATGTGTGCACTAGTCCCTCCAGTGTTCCCAAA
CTTTGGGTGGCCGTCGACAGGAGAGTACGAGAGTTACTACCTGGCCGGAGAGAACCTCGACGACTTTACGTTTCTTGATTTTCCAG
CACAAGAGACATATGGAGTGGAACATCATCAGGAGATTCAGGAATTGTTGGGGGTCTCTGTTGCGTCCGAGGGCAATGGGGTCGTG
ACCAAGAAGCTTAATCACAATGCTAGTGAGCGTGACCGTCGCAAGAAGATCAACTCTTTGTTCTCGTCTCTCCGTTCATGTCTTCC
CGCTTCTGATCAGTCGAAGAAGTTAAGTATTCCTCAGACGGTTTCTCGGAGCTTGAAGTACATACCGGAGCTACAAGGAGAAGTGA
AGAAGTTAATAAAAAAGAAGGAAGAACTCTTGGTGCGAGTATCGAGTCAAAGAGACATTGAACATTACGTTGAGCCGCAACCAAAG
GCCGTTACACGTTACGTCGCGACCATTTCTGCGACTAGGCTTGGAGACAACGAAGTGATGGTCCAAATCTCATCGTCCAAGATTCA
TAACTTTTCAATATCTAATGTGTTAAGTGGGTTAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCTTCAAGGTCTCATGGAG
AAAGGCTCTTCTACACTTTGCATCTTCAAATGGGAAATATAGATAATCACAATCTGACGTGCGAAGAGCTAAACCAGAGAATGTTG
TACTTGTATGAGGAATGTGGAAACTCGTTTAGATGATAATCTGTTCCTGTTTCTTTTAGTTATGTCATCCTTTCTCAACATCTAAT
GTTCACGTAGTCGAGTTGTTTCGTTTATTTTTCTTGTCGAAGTCAATGACCGATTATTACATTTACATGCTACTGAATATTGACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878123 OBP3-responsive gene 3 [Arabidopsis lyrata subsp. lyrata]10326e-110
NP_191257 transcription factor ORG3 [Arabidopsis thaliana]9681e-102
NP_191256 transcription factor ORG2 [Arabidopsis thaliana]9546e-101
XP_002878122 OBP3-responsive gene 3 [Arabidopsis lyrata subsp. lyrata]9341e-098
XP_002881763 predicted protein [Arabidopsis lyrata subsp. lyrata]6259e-063

Swiss-Prot top hits (Blast detail)Scoree value
Q9M1K0 Transcription factor ORG39686e-104
Q9M1K1 Transcription factor ORG29543e-102
Q9ZVB5 Transcription factor bHLH1006164e-063
Q9FYE6 Transcription factor bHLH1013575e-033
Q9FLI0 Transcription factor bHLH1201399e-008

TrEMBL top hits (Blast detail)Scoree value
C0SV82 Putative uncharacterized protein At2g41240 (Fragment)6167e-062
A5C6G0 Putative uncharacterized protein5441e-053
A5C2W4 Putative uncharacterized protein4876e-047
B9IHR7 Predicted protein4671e-044
B9SZX1 DNA binding protein, putative4438e-042

Arabidopsis top hits (Blast detail)Scoree value
AT3G56980.1 BHLH039; DNA binding / transcription factor9686e-105
AT3G56970.1 BHLH038; DNA binding / transcription factor9552e-103
AT2G41240.1 BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor6164e-064
AT2G41240.2 BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor5922e-061
AT5G04150.1 BHLH101; DNA binding / transcription factor3574e-034

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  25%
 
102  25%
 
121  13%
 
62  25%
 
91  13%

Unigene MembersMember information