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Information for unigene UN18992
| FASTA Sequence |
| Unigene ID: UN18992 | Length: 1217 |
SSR | SNP | GCTCCTGAATATTTGGCTGGTTACTACATGCTTCAAGGTGCTAGTTCGTTTTTGCCAGTGATGGCCCCTGCCCCTAGAGAGAATGA
GCGGATTGTGGATGTAGCTGCTGCTCCTGGTGGAAAAACAACTTACATTGCTGCTCTAATGAAAAATACTGGCTTGATATTTGCGA
ACGAGATGAAAGTACCTAGGCTCAAGTCGCTAACTGCCAATCTGCATCGCATGGGGGTCACAAATACCGTAGTTTGTAACTATGAT
GGAAGAGAGCTACCCAAGGTGTTAGGTGAGAAATCGGTTGATAGAGTATTGTTGGATGCACCCTGCAGTGGGACTGGGGTCATTTC
GAAAGATGAATCAGTTAAAACTTCGAAATCTCTAGAGGATATAAAGAGATTTGCTCACTTGCAAAAGCAACTTTTACTAGCTGCTA
TTGATATGGTGGATGCCACTTCCAAAACTGGTGGATATATTGTTTACTCAACATGTTCACTTATGGTTGCTGAGAACGAAGCCGTA
ATTGACTATGCGTTGAAGAAAAGGAATGTTCAACTCGTTAAAACTGGACTCGATTTTGGCCAAGATGGATATAGCAAATTTAGAGA
ACACCGGTTTCATCCATCTTTAAAGCAGACTAAACGTTTTTATCCTCATGTACACAACATGGACGGATTCTTCGTGGCAAAGCTGA
AGAAAATGAGCAACATGAAACAAACGTCAGAGGATGATGACGAGGCGGTAGAAACTGTAGAACAAGCTGATGTGTCTAGTGATGAT
GATGATGATGAAGCTGAGGCGATGGAAGAGATGGAGAAGGTTTCTGTTCCCAGTAAGCAACCCAAGGAAACTAAAGAGAACAAGGA
GAGACTTGCAAAATCAAAGGAGAAGAAGGGCAAAAAGGATGCGAAATCAAAATCTAAAAACGTTGAGAGGAAGCCAAAGAAGAAGA
GATCTGATTGGAAGAAGGAGATTGCTCAAGCTAGGGAAGAGAAAAGAAGAGCCATGAGAGAGAAGTCGAAGGAGAAGCAATGATTA
AGTGGTAATGCATCAAACACTATCATCTATGCTCATGGGGAAGTCTAAGGAGGTGCCAATGCTTGTTTTCTTTATTATTCGTTCGC
GAACTATTTGTTTAACATTAAAATTTGAAAGCCAAAGAGTGACAGTAACATGTCCAAAAGTTTTGTTTCAATTACTTCCAAAAATG
TCTTTTTAGAGGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866118 hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp. lyrata] | 1377 | 7e-150 |
| NP_850927 S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | 1339 | 2e-145 |
| NP_194390 S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | 1304 | 2e-141 |
| XP_002869602 hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] | 1287 | 2e-139 |
| BAH19490 AT5G55920 [Arabidopsis thaliana] | 1259 | 3e-136 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46087 Putative ribosomal RNA methyltransferase NOP2 | 903 | 3e-096 |
| Q922K7 Putative ribosomal RNA methyltransferase NOP2 | 885 | 3e-094 |
| O94268 Putative ribosomal RNA methyltransferase nop2 | 859 | 4e-091 |
| P40991 Putative ribosomal RNA methyltransferase Nop2 | 811 | 1e-085 |
| Q60343 Putative methyltransferase MJ0026 | 391 | 7e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FG73 Nucleolar protein-like | 1339 | 1e-145 |
| Q8VYM6 Putative uncharacterized protein At4g26600 | 1304 | 1e-141 |
| B9DFH3 AT5G55920 protein (Fragment) | 1259 | 2e-136 |
| B9S9W8 Proliferating-cell nucleolar antigen p120, putative | 1130 | 2e-121 |
| A5AR63 Putative uncharacterized protein | 1108 | 8e-119 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G55920.1 nucleolar protein, putative | 1435 | 5e-159 |
| AT4G26600.1 nucleolar protein, putative | 1304 | 8e-144 |
| AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | 263 | 4e-023 |
| AT5G26180.1 NOL1/NOP2/sun family protein | 185 | 4e-014 |
| AT5G26180.2 NOL1/NOP2/sun family protein | 185 | 4e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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