RadishBase

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Information for unigene UN18996

FASTA Sequence

Unigene ID: UN18996	Length: 1057	SSR	SNP
GGAATAAAGAGAGAGAGAGGTCCCCATTGTCTTCCTCGTCACAAAACTCACTTTGTGCACAGAGAGACAGAGAGAGAGAGAGATCA AAGAAAGAAAGAAAACCGTAATTTTAAGGCAGAAGAACGATGTCGAGCTTACAGAAGAAGCCGAGCTTCTCAGAAACATGTAGTCG TTTGAGTCGTTACCTCAAGGAGAAAGGTAGCTTCGGAGATCTGAGCTTGGGGATGACATGCAACCCCGACATCAATGGAGTTTTTG CTGTGTCACGTCAGCCAACGATGATGAATCTCTTCCCTTGTGAAGAAGGTTCGTCTCCTCCTGAAGACGTTAAACCAAAGCATATG GTTCCTCCTCGCCAGTCAAGCTTTTCTTCCTCCTCTTCCTCTCAAGTTAAGGAGGAAGTGGAGAAGACCGTGGAGTCTCAATCGTC TCCGTTGACCATATTCTACGGTGGTCAAGTTATGGTGTTTGATGATTTCCCTGCTGAGAAAGCCAAACAAGTCATTGACTTGGCTA ACAAAGGAAGTGCTTATACTCAAAACTTAGCCAAGAACCAAAAGGAAGTTCCTAGCCCTGCAATAACCGCAGCAGCACCAGAGCCA ATCCAGACCAACACGTCCTCTTTAGCTTGCGAACTCCCAATTGCTAGAAGAGCTTCGCTTCATCGATTCCTGGAGAAGAGAAAGGA TAGGATTACATCAAAGGCACCGTACCAGGTAGACGGTTCAACCGAAGCGTCTTCAAAGCCTAACACATCTTGGCTCGGTTCTCAGT AATCTTGACCATATCTCTAAAGACTCTATTGATGCTCCATCGTTTTCAAATTACCAAGCTCCTCCCTTGTTCATATTGTTTATATA AAATTGATATTTTTCACGTTTGTTCAAATGCACCATCAGTAATATCTGTTGTATGAGTGTGGTCTTATAGTGTTCTTTTTTTGGGG CTTAAACCTATCTGCCGGTGTCAACATTTGCTTGCAACTTTTGTAAGAAACATCAGTTCTGTTGTTGTTCATTTTCTTTGTTGACG GCTTTAATATCATCTTAGTTTAATT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ33919 unnamed protein product [Thellungiella halophila]	811	2e-084
XP_002889001 hypothetical protein ARALYDRAFT_476633 [Arabidopsis lyrata subsp. lyrata]	743	2e-076
NP_564075 protein TIFY 10A [Arabidopsis thaliana]	596	2e-059
AAM65383 unknown [Arabidopsis thaliana]	587	2e-058
NP_565096 protein TIFY 10B [Arabidopsis thaliana]	480	6e-046

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LMA8 Protein TIFY 10A	596	9e-061
Q9S7M2 Protein TIFY 10B	480	3e-047
Q9C9E3 Protein TIFY 11B	198	1e-014
Q9M246 Protein TIFY 3A	151	4e-009
Q93ZM9 Protein TIFY 9	139	9e-008

TrEMBL top hits (Blast detail)	Score	e value
C6T4J6 Putative uncharacterized protein	423	2e-039
C6TD57 Putative uncharacterized protein	417	8e-039
Q3ED96 Uncharacterized protein At1g19180.2	412	3e-038
B9ST81 Putative uncharacterized protein	389	1e-035
B4FQE1 Putative uncharacterized protein	319	2e-027

Arabidopsis top hits (Blast detail)	Score	e value
AT1G19180.1 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	596	8e-062
AT1G74950.1 TIFY10B	480	2e-048
AT1G19180.2 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding	412	2e-040
AT1G72450.1 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	198	1e-015
AT5G13220.1 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	139	8e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			33%


12	2			17%


7	2			17%


10	4			33%

Unigene Members	Member information