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Information for unigene UN19029
| FASTA Sequence |
| Unigene ID: UN19029 | Length: 1769 |
SSR | | GGGAGAGAGAGAGAGTAGTAATGGTACGAGGAGGTTCATCATCGAAGAAAGGAGGATCCGGAGGAGGAGACAAAGACGATCCAGAG
TCAAAACAGAGAAAGAGACTAAAAACCCTAGCTCTCGACAACAAACTCCTCTCCTCCTCTCCTTCCCGATGCCTCTCCTCTCTCAA
ACCATCGAAGCAAGTCCTGAAACACCACGGCACCGACATCATCCGCAAGTCTCAGCGCAAGAACCGCTTCCTCTTCTCCTTCCCCG
GTCTCCTCGCTCCCATCTCTGCCGCCACCATCGGCGATCTCGATCGTCTCTCCACCAAGAACCCCGTCCTCTACCTCAACTTCCCC
CAGGGTCGGATGAAGCTTTTTGGAACGATTCTTTATCCGAAGAACAGATACTTGACTCTCCAGTTCTCTAGAGGTGGCAAAAACGT
CTTGTGCGATGACTATTTTGATAACATGATTGTGTTCTCTGAGTCATGGTGGATTGGGACTAAAGAGGAGAACCCTGAAGAAGCTC
GTCTTGATTTCCCTAAAGAACTCTCTCAGGTAGAGAAAACTGAAGAGTTTGATTTTCGAGGTGGCGCAGGAGCAGCAGCAGCAGCT
TCGGTCAAGACCACTCCTGAAACTGGTAGCCAACAACCGACGGAGACAGAGACAGACTCGCCTGAAGTTGTAGTGGAGGAGATTTT
GTCTGATGATGATGGAGAGTTTATGGACGATAAGATTCAAGTCACACCAGTTCAACTAACTCCTCCTGTTCGTCACTCTCAGAGAA
ATTCTGGCAAGAAATTCAACTTTGCAGAAACTTCTCCAGAAAACTCCTCAGGTCAAAGTGAAGACAATACATCTGATGAAGGAGAT
GAGAAGCCTGTGTTGGAATCTGATTCTCCAATAAGAGTTCATGAGGAACCTCTAGCTGATATTACTACTTCATCAGCAGGAAAGTT
ACCTACTGAAATTCCAGCTAAAAAAGAAAAATCAAACAGCAAAGACGGTAAGCTCGTTCAAGCTACAGTAGCCAATCTATTCAAGA
AAGCAGAGCAGAAAACAGTTGGAACTTCGAAGGCCAAATCATCCTCAAAGGCTGCCCAGAAGAAATAGAGGTTTGTTGTTTCTTTT
GCTGTGAGAATGAACTGTTTTTCTAGCTCTTTCAGTTATGTTCTGTAAGAGGAATGAGATATTAATTTACTACAAGACCGATGATT
ATGTTTCAGAAATAATAGGAATGTTATAATGAATTTTCACCAAGCTTATTAATAGTATGTGTTCCCTGAGTTATGTGTAAAGCATG
TTTGTTCAATTTGATACAAGAGTCTCTCATCTATCTATACGAATGACCAAGGCACTACTCCTTTTTATCATTGTTTTTTCATCTCA
ATCAACAGATCCATCTCATTGAGCTTTCAAAAAAAAAAAAAACTAAAAGGATCCTTGCAAAAACTTGTCCACTCTATGATTGGTTT
CAAATGAAAGAAACTTCATGCAAATAGGAGGTTCAACTCCAGCTATAGCGAGCACAGAGCTGGGCAAAGTCCAAATACCATCTCCA
CATATCAAACCAAAAGCCACCGCTGTTGCAAAAGCTTCAGCCTTTGGTGCATCTAGTCTCTCCCACACAAACAAAATCGAACTCCC
CACACACATGTCGATCGCAAAGTAAGGCCCTAAAAAAAACGGTATAGCCATTGCCATGGGTAGAGGAACAAACCTTCCCCACCTGT
TCCCAAGACCATCTTTCAGTACGTTTATCAGTATGGCAAAACCGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564526 DNA-binding protein RHL1 [Arabidopsis thaliana] | 1370 | 8e-149 |
| AAC69460 ROOT HAIRLESS 1 [Arabidopsis thaliana] | 1367 | 2e-148 |
| XP_002894107 hypothetical protein ARALYDRAFT_473976 [Arabidopsis lyrata subsp. lyrata] | 1362 | 6e-148 |
| XP_002281960 PREDICTED: hypothetical protein [Vitis vinifera] | 846 | 4e-088 |
| NP_001117449 DNA-binding protein RHL1 [Arabidopsis thaliana] | 843 | 1e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O81242 DNA-binding protein RHL1 | 1370 | 3e-150 |
| Q6R3K4 Probable metal-nicotianamine transporter YSL8 | 558 | 4e-056 |
| Q9LUN2 Probable metal-nicotianamine transporter YSL5 | 499 | 3e-049 |
| Q9SHY2 Probable metal-nicotianamine transporter YSL7 | 428 | 5e-041 |
| Q0J932 Probable metal-nicotianamine transporter YSL10 | 399 | 1e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H502 Uncharacterized protein At1g48380.2 | 843 | 7e-088 |
| B9SVP0 Putative uncharacterized protein (Fragment) | 672 | 4e-068 |
| Q2XPY4 YSL transporter 2 | 491 | 4e-047 |
| A9U1E3 Predicted protein | 484 | 3e-046 |
| B9S275 Oligopeptide transporter, putative | 470 | 1e-044 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G48380.1 RHL1 (ROOT HAIRLESS 1); DNA binding / protein binding | 1372 | 2e-151 |
| AT1G48380.2 RHL1 (ROOT HAIRLESS 1); DNA binding / protein binding | 843 | 4e-090 |
| AT1G48370.1 YSL8 (YELLOW STRIPE LIKE 8); oligopeptide transporter | 558 | 4e-057 |
| AT3G17650.1 YSL5 (YELLOW STRIPE LIKE 5); oligopeptide transporter | 500 | 2e-050 |
| AT5G45450.1 iron transporter-related | 445 | 5e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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