RadishBase

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Information for unigene UN19045

FASTA Sequence

Unigene ID: UN19045	Length: 2141	SSR
GGGCCTGGCTTCTCATCTTGGTTTCCTGCTGTTAACAACTATTCAGCAATGAATATTCCTCAAGTCTTGCCTGAACGAGGCAATGG ACCGCAGAGAATGGTTGGTCAAACATCTGAAGTTTCATCATATACACCTGATATGTACAGAGGCCCTGTTTTATTGTCTTCTCCAG CAGTTTCATTCCCACCCACAGCATTTCAGTATCCTGGGTTTCCTTTTGGAACCACCTATCCTCTTTCCTCAGCAAACTTTTCAGGT GCTTCAACAGCATACATGGACTCTTCATCAAGTGGCAGGCTATGCTTCCCTCCTGTCAACTCCCAAATGTTGGGTCCAGGAGTTAC CATCCCTTCTAACTACCCAAGGCCTTATGTTGTTAACCTCCCAAACGGTAGTAGCAATGGTGGAGTTTCGGACAGCAACAATGCAA AATGGTTTAGATCTGGTCTTGACTTAAACTCTGGACCAGGAGGGCATGAAACTGATGAAGCAGCAGCACTTGTACAAAGACAACTA TCTTCCTCTAGTTCTTTACCTTTGAGAGATGAAGCAAGAATGTATCAAATGTCAGGTGGTACTCTTAAGAGGAAGGAACCAGATGG TGGGTGGGGATGGAGGAGGATACAAGTAATCCTTATGGCAAATAACAAACCTGTGAATTTCTTTGTAGGCCGTTGCACTAAGGCTG TACTCTGAAGATAAAAGCAGACAGCACGCCACAAAGGACAGTTTTTTAGGAAAAAAAAAAATCTGACCCCTCTGTTTTACAATCAT TCGTGTAGATACTTCCAAACAGTTTCGGTTTTTCACAGGCATGGCTTATAAAACTTTCAGATAAACACAAGACCATCATCATCATC ATCGCTTTGTTTATTTGCTCTCATCTCCCAGAGTTTTCACCAGGTGATCTTTTTAAAAACTACACACTACTCTTTGCCTTTGTCTT CTTTAACATCTATCTATGTATCTGGGCCAAAAGGCAAGGCGAGAGTGTTTAGTTTATGTTTTTTTTTAAAAGCTCTGCTGTAAGAA AGAAAAATGATGGTGATGGTCCTTGAAGCATTTGTTGGCATGAGACTGAGATTAGAATTTGCCATGGTTTGTATTATATAGTCAGC AAACTCTTTTCTAGACTGTTCTACTTGTGGTAGTTATGTGTCGAACAAGTGAACTTTTACTCTTATGTTACAACAATATGGCTGAT GACAGGTTTGAAACAATAAACACAATTGAGTTGACAAGAGTAAATCTCTCCATCTCTCTCTCTTCCATGTAATCTATTGATTAAGT AGAGGCTAATAACTCTCTTACATGATTCAATCTATATATATAATGTGTTTCTCATTTATCATACAAACTCAAAAGTGGAATTCCAG AACATAAAGACAGAGAGTTTAGGTTCATCATATCATCATCAATGCCGAGTCACTATCCTCCCACACAGAACGTTTGATAAACACCC GTGGTGGTGGTTCGACTGTTGCTTCTTCTTCTTCTTGGTCTTGTCCTTTTGTTTAACCACCGGTTTGATCACTTCCTTGATTGCGG AATCAAAAACTGCTTTCACATTCTGTTGAGTTTTTGAGCTACATTCAATGTAATATGTTGCGCCTATTAGCTTACGCAACTCCTCT CCCTGTGCAGTAGTTACAGGGGATAGTCCAGGATGGTCAGCCAGATAATGCTTATCCTCACGGAGATCTAATTTGGTACCGACAAG AACTAATGGAACTCCTGGAGCAAAGTGTTGGAGCTCAGGGATCCACTTTTTAAAAACATTTTCATAGCTAGCTCTGCTGACCAATG AGAAAGACAAGACGAAAACATCTGCTCCTCTGTAACTTAAAGGCCTTAGTCTGTTGTAATCTTCTTGCCCAGCAGTGTCCCATAGC CCTAAGTTCACAGTGGTGCCTTCAACTACAACGTTTGCACTGAAGTTGTCAAAAACCGTTGGTACATAGTCAGTAGGGAATTTGTT GCTGGTGTAGCAGATGAGCATACAGGTTTTACCAACGGCGCCATCACCAACAGTTACACATTTGATGAACTTTGAAGCACTTGAAG CCATTCTTCTTCTCTACAACACAATCACAAGACGAAGAAAAAAAACAGAGAGAAATAAAATGAAGTGATTACTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_201093 Rac-like GTP-binding protein ARAC10 [Arabidopsis thaliana]	1091	2e-116
BAD42977 Arac10 [Arabidopsis thaliana]	1087	6e-116
XP_002875876 hypothetical protein ARALYDRAFT_485165 [Arabidopsis lyrata subsp. lyrata]	976	5e-103
NP_566897 Rac-like GTP-binding protein ARAC8 [Arabidopsis thaliana]	965	9e-102
XP_002318640 predicted protein [Populus trichocarpa]	955	1e-100

Swiss-Prot top hits (Blast detail)	Score	e value
O82481 Rac-like GTP-binding protein ARAC10	1091	9e-118
Q9SU67 Rac-like GTP-binding protein ARAC8	965	4e-103
Q6Z808 Rac-like GTP-binding protein 3	919	8e-098
Q67VP4 Rac-like GTP-binding protein 4	918	1e-097
O04369 Rac-like GTP-binding protein RAC1	846	2e-089

TrEMBL top hits (Blast detail)	Score	e value
Q67XC6 Arac10	1091	1e-116
Q683A3 Arac10	1087	4e-116
B9I374 Predicted protein	955	9e-101
B9RB64 Rac gtpase, putative	954	1e-100
B9IEN7 Predicted protein	951	3e-100

Arabidopsis top hits (Blast detail)	Score	e value
AT5G62880.1 ARAC10; GTP binding	1100	7e-120
AT3G48040.1 ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10); GTP binding / GTPase	974	3e-105
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	822	1e-087
AT1G75840.1 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase	821	2e-087
AT3G51300.1 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding	818	3e-087

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	3			25%


12	1			8%


21	1			8%


6	5			42%


7	2			17%

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