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Information for unigene UN19080
| FASTA Sequence |
| Unigene ID: UN19080 | Length: 1647 |
SSR | | CTAGAGTTTGCTGAAGGAAGACCACTTGGAAAGTCAGGCTTGTATTGGCTGAAAATACATTTAGCGAACCTCTATGCAGGTGGTGT
TGAGAAGCTTTCGCACGATGGGCGTCTGGCTTTTGTGGAAAACCATTTGGATGATATAATAGACTCAGCTGAAAACGCTATTCACG
GAAAAAGATGGTGGTTAAAGGCTGAGGATCCTTTTCAGTGTTTAGCTGCATGTGTCATTCTGGGGCAAGCCTTGAAAAGTCCTTCA
CCTTATTCTGTAATCTCCCACTTGCCTATACATCAGGATGGGTCATGCAATGGTCTACAGCATTATGCAGCTTTGGGAAGAGATAG
TTTTGAAGCAGCAGCAGTTAATCTAGTTGCGGGAGAGAAACCAGCTGATGTCTATTCTGAAATTTCATTGAGGGTCCATGAAATAA
TGAAGAAGGAAGCAATAAGGATCCTGAGTCAAACCCAACCGCCGCGTTGGCAAAGATCCTCATCAATCAAGTCGACAGGAAGCTGG
TAAAGCAGACGGTAATGACGTCAGTATATGGTGTCACATATGTTGGAGCACGTGAACAAATCAAAAGAAGATTAGAAGAGAAGGGT
GTTATCAGTGACGAGAGAATGTTATTTGCTGCTGCTTGCTATTCAGCAAAAGTAACACTAGCTGCCCTGGGAGAGATATTTGAAGC
GGCACGTGCCATTATGAGTTGGCTTGGTGATTGTGCAAAGATTATCGCTTCCGATAATCATCCAGTACGATGGACCACGCCTCTTG
GACTTCCTGTTGTGCAACCTTATTGCAGAAGTGAAAGACATCTGATAAGAACATCTCTTCAGGTTTTGGCTCTGCAGCGAGAGGGT
AACACGGTGGATGTTAGGAAACAAAGAACAGCGTTTCCTCCCAACTTTGTGCACTCGCTGGACGGCACTCACATGATGATGACTGC
CGTTGCATGTCGAGAGGCTGGCCTGAACTTTGCAGGTGTGCATGACTCTTACTGGACGCATGCGTGCGATGTTGACACAATGAACA
GAATACTTAGAGAGAAATTCGTTGAGCTTTACAGCACACCGATCCTTGAAGATTTACTCCAAAGTTTCCAAGAGTCATACCCGAAT
CTCGTGTTTCCTCCAGTACCAAAGAGAGGTGATTTCGATTTAAAGGAAGTGCTCAAATCACACTACTTTTTCAACTGAGTCACTGG
CAAAACAGGAGTCAGTTTTAACTTGGGGATCTTTCTTGGTGCGCTGTAAATAATCATCATCCGCCACCTCAAAGGAGATGGAACGA
ACCAGAATCAGCACGAAAGACTGCTACTGCTACTGCAACACACTAAGATTCTGACACAAATGTTGCAGAAGAAGCTTTTAGACAAA
TCTACTCAAGACAATATTTATGCATCATTGAAGAAGTTTCTAGCTCAACAGGTAGGTCCCTAGGCAGAGTATTAAATAGTGGATGC
AAAGTCGTTGCATCAAGCTTGTCTTTCTGGATCGAGAGAATAGGTTTAGTTATGCTGTATGTCATTCGTACTGTTGTACAGGAGAG
AGAGAGACCTTCGTATAGAAAGAACTCAAAAATCAAAAGGCTACTCTGTGATTTTTTGTAGCTAACTATTTTTGTCAAAACATGAG
ACATCTTTTATGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_179989 DNA-directed RNA polymerase 3 [Arabidopsis thaliana] | 1277 | 4e-138 |
| XP_002880548 PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] | 1277 | 4e-138 |
| P69242 RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor | 1109 | 1e-118 |
| CAN79881 hypothetical protein VITISV_017990 [Vitis vinifera] | 1103 | 6e-118 |
| XP_002274521 PREDICTED: hypothetical protein [Vitis vinifera] | 1099 | 2e-117 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O24600 DNA-directed RNA polymerase 3, chloroplastic | 1277 | 2e-139 |
| P69243 DNA-directed RNA polymerase 3A, chloroplastic | 1109 | 5e-120 |
| P69242 DNA-directed RNA polymerase 3, chloroplastic | 1109 | 5e-120 |
| Q8L6J1 DNA-directed RNA polymerase 3B, chloroplastic | 1091 | 6e-118 |
| Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial | 1045 | 1e-112 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WN04 DNA-directed RNA polymerase | 1277 | 3e-138 |
| A5CAT5 Putative uncharacterized protein | 1103 | 4e-118 |
| Q52GZ3 DNA-directed RNA polymerase | 1085 | 5e-116 |
| B9IMA6 DNA-directed RNA polymerase | 1078 | 3e-115 |
| B9HB51 DNA-directed RNA polymerase | 1060 | 4e-113 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G24120.1 SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase | 1278 | 1e-140 |
| AT1G68990.1 DNA-directed RNA polymerase, mitochondrial (RPOMT) | 953 | 6e-103 |
| AT5G15700.1 DNA-directed RNA polymerase (RPOT2) | 945 | 5e-102 |
| AT2G24120.2 SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase | 742 | 2e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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