RadishBase

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Information for unigene UN19105

FASTA Sequence

Unigene ID: UN19105	Length: 801		SNP
GGAAGAAACCTGTAACAACTTCACTTTGTAACCGGAGAAGATGAAGGTGGTAGATAAGATCAAGTCATGGACCGACGAAGGCAAAA CGACCTTCTCCTTCGAGTTCTTCCCACCGAGGACGGAGGATGGAGTCGACAACCTCTTCGAGCGTATGGATCGTCTCGTCGCATAC GGTCCAGCCTTCTGCGATATCACGTGGGGAGCTGGTGGAACAACGGCGGATCTCACGCTCGACATTGTCTCTAGGATGCAGAACGT TGTCTGCGTCGAGAGCATGATGCATCTCACGTGTACTAACATGCCTGTTGAGAAGATCGATCATGCGCTTGAGACGATACGGTCTA ATGGGATTCAGAACGTTCTTGCGCTTAGAGGTGATCCTCCTCACGGTGAGAACAAGTTTGTTCAGGTTGAAGGAGGGTTTGGTTGC GCTTTGGATCTTGTGAATCATATTAGGAGCAAGTATGGTGATTACTTTGGTGTCGCCGTTGCTGGTTATCCTGAGGCTCATCCTGA TGTCATTGGTGAAAATGGCCTAGCGTCCAAGGAAGCTTATGAGAGTGATCTTGAGTACCTTAAGAAAAAGGTTGATGCTGGAGCTG ATCTGATTGTTACTCAGCTTTTCTTTGACACTGATATACTCTTAAAATTTGTGAATGACTGTCGGCAAATTGGTATCAAGTGTCCC ATTGTTCCTGGAATCATGCCCATTAATAACTACAAAGGATTCTTGCGTATGATTGGTTTTTGCAGACCAAGATACCAGCTGAAGTC ATGGCAGCATTGGAGCCTATCCAGGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002880088 MTHFR2 [Arabidopsis lyrata subsp. lyrata]	1182	1e-127
NP_566011 methylenetetrahydrofolate reductase 2 [Arabidopsis thaliana]	1175	9e-127
CAB53783 methylenetetrahydrofolate reductase [Arabidopsis thaliana]	1170	4e-126
AAK43892 putative methylenetetrahydrofolate reductase [Arabidopsis thaliana]	1166	1e-125
XP_002876531 MTHFR1 [Arabidopsis lyrata subsp. lyrata]	1132	9e-122

Swiss-Prot top hits (Blast detail)	Score	e value
O80585 Methylenetetrahydrofolate reductase 2	1175	4e-128
Q9SE60 Methylenetetrahydrofolate reductase 1	1127	2e-122
Q9SE94 Methylenetetrahydrofolate reductase 1	1062	5e-115
Q75HE6 Probable methylenetetrahydrofolate reductase	1034	1e-111
P53128 Methylenetetrahydrofolate reductase 2	590	3e-060

TrEMBL top hits (Blast detail)	Score	e value
Q3EAG8 Methylenetetrahydrofolate reductase	1127	2e-121
A5ATB7 Methylenetetrahydrofolate reductase	1076	2e-115
C5WVY7 Methylenetetrahydrofolate reductase	1063	6e-114
B9HG95 Methylenetetrahydrofolate reductase	1047	5e-112
B9STA4 Methylenetetrahydrofolate reductase	1041	2e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44160.1 MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH)	1175	4e-129
AT3G59970.1 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)	1127	1e-123
AT3G59970.2 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)	1127	1e-123
AT3G59970.3 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)	1127	1e-123

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			17%


10	1			17%


7	2			33%


11	2			33%

Unigene Members	Member information