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Information for unigene UN19129
| FASTA Sequence |
| Unigene ID: UN19129 | Length: 1973 |
| SNP | GGAGCATCCTTCAACCTTGTTGTTATTGAGAGCTTCCTTCCACTTCTCGAATCTGCTCCGTCGCCGTCGCTGCAAAACTTTCTCCT
CCGATTCCAATTCTTTTCACTTAACGCTTAGATCGCAAAAACATGAACGCTCCGGTTCTCGTTCTCAAGGACTCTTTGAAGCGTGA
ATCTGGAACGAAGGTTCACCATGGTAACATTCAAGCTTCCAAGGCTGTGGCTGATATCATCCGCACCACATTGGGTCCTCGCTCTA
TGTTGAAGATGCTTCTTGATGCTGGTGGAGGAATTGTTGTTACCAATGATGGGAATGCTATTTTGCGTGAACTAGATGTTGCTCAC
CCTGCAGCTAAGTCGATGATTGAGCTGAGCCGAACACAGGACGAAGAAGTCGGTGATGGGACGACATCTGTTATTGTTCTTGCTGG
TGAAATGTTACATGTTGCCGAAGCTTTCATTGAAAAGAGTTACCATCCTACAGTCATATGCCGAGCTTATAATAAGGCTCTTAGAG
GATGCTATCGCTGTTCTTGACAAGATTGCCATGACAATCGATGTGAATGACCGTGGAACAGTACTAGGATTAGTCAAGAGCTGCAT
AGGAACAAAATTCACCAGCCAGTTTGGAGATCTAATTGCTGATTTGGCTATTGACGCCACAACTACTGTTGGTGTTGATCTTGGTC
AAGGATTGAGGGAAGTGGATATCAAAAAATACATCAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGACTCCAAAGTTCTCAAA
GGAGTCATGTTCAACAAAGACGTAGTTGCTCCTGGTAAAATGAAGAGAAAGATCGTCAACCCACGGATTATTCTTCTCGACTGTCC
CCTCGAGTACAAGAAAGGTGAAAACCAAACAAATGCCGAGTTGGTCAGAGAAGGGGACTGGGAAATTCTGCTGAAACTCGAAGAGG
AGTACATCGAGAACATCTGCGTGCAAATACTAAAGTTCAAACCGGATCTGGTCATCACAGAGAAGGGACTCAGTGACTTGGCATGT
CACTACTTCAGTAAAGCTGGAGTTAGTGCGATTCGGAGGCTGAGAAAGACGGATAACAACAGAATCGCTAAGGCGTGTGGTGCTGT
GATTGTGAACAGGCCTGACGAACTTCAAGAGTCTGATGTTGGTACTGGCGCTGGCTTGTTTGAGGTCAAGAAAATAGGAGATGATT
TCTTTGCCTTCGTTGTTGATTGCAAAGAACCCAAAGCATGCACTGTGCTCTTAAGAGGACCAAGTAAAGATCTTCTCAACGAAGTT
GAAAGAAATCTTCAGGATGCCATGTCTGTTTCAAGAAACATCATCAAGAACCCAAAGCTTGTTCCTGGTGGAGGAGCCACTGAATT
AACCGTTTCCGCCACTTTAAAACAGAAGAGTGCAACGATTGAAGGAATCGAAAAGTGGCCTTATGAAGCAGCTGCTATAGCTTTTG
AGGCTATTCCGCGTACTCTAGCACAGAACTGTGGAGTTAACGTGATCAGAACTATGACAGCACTGCAAGGAAAGCATGCAAATGGT
GAGAATGCCTGGACTGGAATCGATGGAAACACTGGTGCAATAGCTGACATGAAGGAGAGCAAGATATGGGATGCGTACAATGTGAA
GGCTCAAACGTTTAAGACAGCGATTGAAGCGGCGTGTATGCTTCTGAGGATTGATGATATAGTGAGTGGTATCAAGAAGAAGCAAG
CTCCAGGAGCTGGACCTTCAAAGCCTACCATTGAGACAGAAGGAGATGCAGACAACGAGCAAATACTTCCTGACTAGAAAATTTTG
CTCTCCACCAACATAAACTTCTTCCTTTTTGTTTTTTTTGCTATTTTAGTTTGAATTTTGAAGTGTTTGTGAAACTTGACAGTCCC
TTTAGTATTTTATGGCTTTGATTGGTAACTTGATTTACTATTGATTAAGTTTGATTTAGACTATAATTCAAAAATTTTACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874310 hypothetical protein ARALYDRAFT_489475 [Arabidopsis lyrata subsp. lyrata] | 2136 | 1e-237 |
| NP_198008 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 2134 | 2e-237 |
| CAN74796 hypothetical protein VITISV_000290 [Vitis vinifera] | 2058 | 1e-228 |
| XP_002268799 PREDICTED: hypothetical protein [Vitis vinifera] | 2052 | 7e-228 |
| XP_002325286 predicted protein [Populus trichocarpa] | 2033 | 1e-225 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O74341 T-complex protein 1 subunit gamma | 1240 | 4e-135 |
| P50143 T-complex protein 1 subunit gamma | 1236 | 1e-134 |
| Q54TH8 T-complex protein 1 subunit gamma | 1233 | 3e-134 |
| O00782 T-complex protein 1 subunit gamma | 1223 | 4e-133 |
| Q6P502 T-complex protein 1 subunit gamma | 1223 | 4e-133 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84WV1 Putative chaperonin gamma chain | 2134 | 2e-237 |
| A5BNS7 Putative uncharacterized protein | 2058 | 1e-228 |
| B9INY9 Predicted protein | 2033 | 8e-226 |
| B9H416 Predicted protein | 2030 | 2e-225 |
| O81503 F9D12.18 protein | 2026 | 5e-225 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G26360.1 chaperonin, putative | 2135 | 6e-240 |
| AT3G11830.1 chaperonin, putative | 515 | 4e-052 |
| AT1G24510.1 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 447 | 3e-044 |
| AT1G24510.2 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 447 | 3e-044 |
| AT3G18190.1 chaperonin, putative | 408 | 1e-039 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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